View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2981_low_2 (Length: 580)
Name: NF2981_low_2
Description: NF2981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2981_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 192 - 570
Target Start/End: Original strand, 42804853 - 42805231
Alignment:
| Q |
192 |
atataagtttattgccgtttttcactaactgtcgcatataattttaacatgaaagaacatgagaggatccattctcattgaagttaagttatgctttcat |
291 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| | |
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| T |
42804853 |
atataagtttattgccatttttcactaactgtcgcatataatttcaacatgaaagaacatgagaggatctattctcattgaagttaagttatgctttctt |
42804952 |
T |
|
| Q |
292 |
ctatgttactttggattgaggttttaatttcatttatgtcgtttttaggggttgaacctatcctgccttcataagatgccctgtcatgaatagcactatt |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42804953 |
ctatgttactttggattgaggttttaatttcatttatgtcgtttttaggggttgaacctatcctgccttcataagatgccctgtcatgaatagcactatt |
42805052 |
T |
|
| Q |
392 |
tattcacaacgcatatgtttataatttttcagtatttcttggaccacaggatattaagagctttttgcaatttacattgaaaatgttgtgtatgtcaacc |
491 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42805053 |
tattcacaacgcatttgtttataatttttcagtatttcttggaccacaggatatcaagagctttttgcaatttacattgaaaatgttgtgtatgtcaacc |
42805152 |
T |
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| Q |
492 |
gccaaggatttgtgttgatgcccttaccattcattatatatttatatttttaatacatctactagaagtttgatgatgt |
570 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42805153 |
accaaggatttgtgttgatgcccttaccattcattatatatttatatttttaatacatctactagaagtttgatgatgt |
42805231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 192 - 570
Target Start/End: Original strand, 42762451 - 42762821
Alignment:
| Q |
192 |
atataagtttattgccgtttttcactaactgtcgcatataattttaacatgaaagaacatgagaggatccattctcattgaagttaagttatgctttcat |
291 |
Q |
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| T |
42762451 |
atataagtttattgccgtttttcactaactgtcacatataattttaacatgaaagagcatgagaggatccattctcattgaagtgaatttatgctttctt |
42762550 |
T |
|
| Q |
292 |
ctatgttactttggattgaggttttaatttcatttatgtcgtttttaggggttgaacctatcctgccttcataagatgccctgtcatgaatagcactatt |
391 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42762551 |
ctatgttactttggattgaagttttaatttcatttatgtcgtttttaggggttgaacctatcccgccttcataagatgccctgtcatgaatagcactatt |
42762650 |
T |
|
| Q |
392 |
tattcacaacgcatatgtttataatttttcagtatttcttggaccacaggatattaagagctttttgcaatttacattgaaaatgttgtgtatgtcaacc |
491 |
Q |
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||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
42762651 |
tattcacaacgtatttgtttataatttttcagtatttcttggaccacaggatattaagagctttttgcaatttacaatgaaaatgctgtgtatgtcaact |
42762750 |
T |
|
| Q |
492 |
gccaaggatttgtgttgatgcccttaccattcattatatatttatatttttaatacatctactagaagtttgatgatgt |
570 |
Q |
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||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
42762751 |
gccaaggatttgtgttgatgcccttaccattta--------ttatatttttaatacatctactagaagtttgatgatgt |
42762821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 20 - 175
Target Start/End: Original strand, 42761001 - 42761156
Alignment:
| Q |
20 |
tacccttctgtgattaaagcatgttccggtacgtgtaaggttttggtaggaaaatcggttcatgggtcggtgtttaggtgtggtttggatcaggatttgt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42761001 |
tacccttctgtgattaaagcatgttccggtacgtgtaaggttttggtaggaaaatcggttcatgggtcggtgtttaggtgtggtttggatcaggatttgt |
42761100 |
T |
|
| Q |
120 |
ttgtgggtactactttggttgatatgtatggtaaatgcggggagattggtgatgct |
175 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
42761101 |
ttgtgggtactactttggttgatatgtatggtaaatgcggtgagattggtgatgct |
42761156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 20 - 175
Target Start/End: Original strand, 42803403 - 42803558
Alignment:
| Q |
20 |
tacccttctgtgattaaagcatgttccggtacgtgtaaggttttggtaggaaaatcggttcatgggtcggtgtttaggtgtggtttggatcaggatttgt |
119 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
42803403 |
tacccttctgtgattaaagcatgttctggtacgtgtaaggttttggtaggaaagtcggttcacgggtcggtgtttaggtgtggtttggatcaggatttgt |
42803502 |
T |
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| Q |
120 |
ttgtgggtactactttggttgatatgtatggtaaatgcggggagattggtgatgct |
175 |
Q |
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|| |||||||||||||| ||||||||||||||||||| || ||||| |||||||| |
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| T |
42803503 |
ttatgggtactactttgattgatatgtatggtaaatgtggacagattagtgatgct |
42803558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 145; Significance: 5e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 196 - 383
Target Start/End: Original strand, 33048811 - 33048988
Alignment:
| Q |
196 |
aagtttattgccgtttttcactaactgtcgcatataattttaacatgaaagaacatgagaggatccattctcattgaagttaagttatgctttcatctat |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33048811 |
aagtttattgccgtttttcactaactgtcgcatataattttaaca----------tgagaggatccattctcattgaagttaagttatgctttcttctat |
33048900 |
T |
|
| Q |
296 |
gttactttggattgaggttttaatttcatttatgtcgtttttaggggttgaacctatcctgccttcataagatgccctgtcatgaata |
383 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33048901 |
gttacttaggattgaggttttaatttcatttatgtcgtttttaggggttgaacctatcctgccttcataagatgccctgtcatgaata |
33048988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 58 - 156
Target Start/End: Complemental strand, 6170821 - 6170723
Alignment:
| Q |
58 |
ggttttggtaggaaaatcggttcatgggtcggtgtttaggtgtggtttggatcaggatttgtttgtgggtactactttggttgatatgtatggtaaatg |
156 |
Q |
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|||| |||| ||||||| |||||||| |||||| || | ||||||||||||||||||| |||||||||| |||| |||| || |||||||||||||||| |
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| T |
6170821 |
ggttatggttggaaaattggttcatgagtcggttttgaagtgtggtttggatcaggatgtgtttgtgggaactagtttgatttatatgtatggtaaatg |
6170723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 58 - 156
Target Start/End: Complemental strand, 6250183 - 6250085
Alignment:
| Q |
58 |
ggttttggtaggaaaatcggttcatgggtcggtgtttaggtgtggtttggatcaggatttgtttgtgggtactactttggttgatatgtatggtaaatg |
156 |
Q |
| |
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|||| |||| ||||||| |||||||| |||||| || | ||||||||| ||||||||| |||||||||| |||| |||| || |||||||||||||||| |
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| T |
6250183 |
ggttatggttggaaaattggttcatgagtcggttttgaagtgtggtttcgatcaggatgtgtttgtgggaactagtttgatttatatgtatggtaaatg |
6250085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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