View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2981_low_9 (Length: 356)
Name: NF2981_low_9
Description: NF2981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2981_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 16 - 339
Target Start/End: Complemental strand, 29107484 - 29107161
Alignment:
| Q |
16 |
atctcaatgtcacctgaaacctttttcccatggggagatcctgaacctgacttcgagttccgtcttcaagatcccgttaacatgctccccgccgatcaac |
115 |
Q |
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| T |
29107484 |
atctcaatgtcacctgaaacctttttcccatggggagatcctgaacctgacttcgagttccgtcttcaagatcccgttaacatgctccccgccgatcaac |
29107385 |
T |
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| Q |
116 |
tcttctccgacggtaaactcgttcctctccacttcaaaccatcttcttcctcttcaaccaccacttcccccnnnnnnntcaccacctccataaccaccac |
215 |
Q |
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| T |
29107384 |
tcttctccgacggtaaactcgtccctctccacttcaaaccatcttcttcctcttcaaccaccacttcccccaaaaaaatcaccacctccataaccaccac |
29107285 |
T |
|
| Q |
216 |
cgaccccattctcttctctcctaaagcacctcgttgctctagccgctggaaagacttacttggtctcaagaaactgtacaacaactccacaaacacatcc |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29107284 |
agaccccattctcttctctcctaaagcacctcgttgctctagccgctggaaagacttacttggtctcaagaaactgtacaacaactccacaaacacatcc |
29107185 |
T |
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| Q |
316 |
acaacaactaagaccatgtcttct |
339 |
Q |
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|||||||||||||||||||||||| |
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| T |
29107184 |
acaacaactaagaccatgtcttct |
29107161 |
T |
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