View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2982_high_7 (Length: 237)
Name: NF2982_high_7
Description: NF2982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2982_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 109; Significance: 6e-55; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 27229772 - 27229660
Alignment:
| Q |
18 |
gatggaatgtagttacataatccctccaactctttttgttcattgagggagtttggagtggggtggagagaaataaaaggatctaaaaggttttatggct |
117 |
Q |
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| T |
27229772 |
gatggaatgtagttacataatccctccaactctttttgttcattgagggagtttggagtggggtggagagaaataaaaggatctaaaaggttttatgggt |
27229673 |
T |
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| Q |
118 |
catttggcacaca |
130 |
Q |
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| T |
27229672 |
catttggcacaca |
27229660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 27269504 - 27269392
Alignment:
| Q |
18 |
gatggaatgtagttacataatccctccaactctttttgttcattgagggagtttggagtggggtggagagaaataaaaggatctaaaaggttttatggct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
27269504 |
gatggaatgtagttacataatccctccaactctttttgttcattgagggagtttggagtggggtggagagaaataaaaggatctgaaaggatttatggct |
27269405 |
T |
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| Q |
118 |
catttggcacaca |
130 |
Q |
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| T |
27269404 |
catttggcacaca |
27269392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 150 - 223
Target Start/End: Complemental strand, 27229307 - 27229234
Alignment:
| Q |
150 |
atttgtggctatcctttctccttgctacctttttgagttgttctcgagttggtttcgttgttgggttatatttt |
223 |
Q |
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| T |
27229307 |
atttgtggctctcctttctccttgctacctttttgagttgttctcgagttggtttcgttgttgggttatatttt |
27229234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 150 - 223
Target Start/End: Complemental strand, 27269055 - 27268982
Alignment:
| Q |
150 |
atttgtggctatcctttctccttgctacctttttgagttgttctcgagttggtttcgttgttgggttatatttt |
223 |
Q |
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| T |
27269055 |
atttgtggctctcctttctccttgctacctttttgagtggttatcgagttggtttcgttgttgggttatatttt |
27268982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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