View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2982_high_8 (Length: 234)

Name: NF2982_high_8
Description: NF2982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2982_high_8
NF2982_high_8
[»] chr3 (35 HSPs)
chr3 (1-228)||(34707298-34707525)
chr3 (1-78)||(37273175-37273252)
chr3 (2-89)||(24281089-24281176)
chr3 (1-66)||(40880912-40880977)
chr3 (1-69)||(36200137-36200205)
chr3 (12-116)||(44014716-44014816)
chr3 (16-69)||(25182948-25183001)
chr3 (1-69)||(41724253-41724321)
chr3 (1-68)||(11039301-11039368)
chr3 (1-63)||(53762361-53762423)
chr3 (8-69)||(1810025-1810086)
chr3 (10-79)||(50015936-50016005)
chr3 (32-77)||(50211807-50211852)
chr3 (1-69)||(47513694-47513762)
chr3 (31-118)||(23793685-23793772)
chr3 (1-40)||(29771879-29771918)
chr3 (1-60)||(42817192-42817251)
chr3 (1-43)||(3015830-3015872)
chr3 (1-39)||(13804818-13804856)
chr3 (1-79)||(38971299-38971377)
chr3 (1-78)||(41057195-41057273)
chr3 (14-68)||(43046720-43046774)
chr3 (1-63)||(47132035-47132097)
chr3 (9-59)||(47249457-47249507)
chr3 (3-76)||(2152132-2152205)
chr3 (16-65)||(21574546-21574595)
chr3 (1-78)||(41644397-41644474)
chr3 (45-82)||(45783347-45783384)
chr3 (1-49)||(5391920-5391968)
chr3 (25-69)||(14548682-14548726)
chr3 (3-43)||(21754760-21754800)
chr3 (17-77)||(21872248-21872308)
chr3 (1-69)||(24624251-24624319)
chr3 (7-43)||(30750047-30750083)
chr3 (1-69)||(43115097-43115165)
[»] chr1 (41 HSPs)
chr1 (1-115)||(4868441-4868550)
chr1 (1-76)||(42336656-42336731)
chr1 (1-79)||(31517691-31517769)
chr1 (1-77)||(32515394-32515470)
chr1 (1-79)||(35925731-35925810)
chr1 (7-78)||(49692004-49692075)
chr1 (7-68)||(38001643-38001704)
chr1 (1-68)||(37811893-37811960)
chr1 (1-63)||(4549271-4549333)
chr1 (1-63)||(15579523-15579585)
chr1 (32-115)||(36070253-36070332)
chr1 (7-69)||(38170651-38170713)
chr1 (1-82)||(3224464-3224545)
chr1 (1-78)||(17420244-17420321)
chr1 (1-78)||(29723530-29723607)
chr1 (9-61)||(4481979-4482031)
chr1 (1-77)||(10199361-10199437)
chr1 (16-76)||(14737680-14737740)
chr1 (1-61)||(28689421-28689481)
chr1 (1-69)||(40413983-40414051)
chr1 (1-60)||(4549889-4549948)
chr1 (7-78)||(6659727-6659798)
chr1 (36-79)||(43371842-43371885)
chr1 (1-75)||(4445749-4445823)
chr1 (1-79)||(4768780-4768858)
chr1 (1-59)||(29635388-29635446)
chr1 (7-69)||(29929582-29929644)
chr1 (1-51)||(33108601-33108651)
chr1 (86-123)||(3052611-3052648)
chr1 (8-77)||(3110039-3110108)
chr1 (18-79)||(4033968-4034029)
chr1 (16-69)||(28075760-28075813)
chr1 (1-65)||(35669013-35669075)
chr1 (2-67)||(42397767-42397832)
chr1 (5-113)||(4549462-4549567)
chr1 (9-77)||(4699568-4699636)
chr1 (1-69)||(6262061-6262129)
chr1 (1-65)||(26779891-26779954)
chr1 (1-61)||(33185927-33185987)
chr1 (1-41)||(47917277-47917317)
chr1 (32-68)||(50644216-50644252)
[»] chr4 (32 HSPs)
chr4 (1-77)||(2996614-2996690)
chr4 (1-78)||(27123304-27123381)
chr4 (1-69)||(33534130-33534198)
chr4 (13-76)||(6428071-6428134)
chr4 (1-69)||(4691889-4691957)
chr4 (5-118)||(7367970-7368079)
chr4 (1-68)||(39886615-39886682)
chr4 (7-69)||(1137759-1137821)
chr4 (1-103)||(23966927-23967029)
chr4 (1-78)||(6987693-6987770)
chr4 (7-67)||(25583639-25583699)
chr4 (1-68)||(1965982-1966048)
chr4 (1-68)||(23819130-23819197)
chr4 (1-68)||(28300261-28300328)
chr4 (2-57)||(37863927-37863982)
chr4 (7-77)||(19304973-19305043)
chr4 (1-39)||(20656078-20656116)
chr4 (1-66)||(2841667-2841732)
chr4 (38-79)||(3549506-3549547)
chr4 (7-76)||(4071925-4071994)
chr4 (36-77)||(22471350-22471391)
chr4 (1-74)||(41097212-41097285)
chr4 (32-69)||(47399557-47399594)
chr4 (17-65)||(1408285-1408333)
chr4 (1-69)||(3176065-3176133)
chr4 (10-78)||(10172112-10172180)
chr4 (25-61)||(31642258-31642294)
chr4 (1-77)||(42461292-42461368)
chr4 (36-68)||(49940128-49940160)
chr4 (36-68)||(50681050-50681082)
chr4 (4-76)||(50742790-50742862)
chr4 (25-61)||(55064901-55064937)
[»] chr2 (40 HSPs)
chr2 (1-79)||(787373-787451)
chr2 (16-87)||(28803473-28803544)
chr2 (7-62)||(44606078-44606133)
chr2 (1-79)||(13234547-13234625)
chr2 (1-76)||(39621992-39622067)
chr2 (2-69)||(43199745-43199812)
chr2 (20-78)||(1318296-1318354)
chr2 (3-69)||(11344731-11344797)
chr2 (6-76)||(19977993-19978063)
chr2 (7-79)||(5902500-5902572)
chr2 (1-61)||(13220474-13220534)
chr2 (7-59)||(16398442-16398494)
chr2 (1-69)||(34651997-34652065)
chr2 (7-87)||(35485964-35486044)
chr2 (1-69)||(41041983-41042051)
chr2 (1-69)||(43456668-43456736)
chr2 (2-69)||(9478341-9478408)
chr2 (1-40)||(9878672-9878711)
chr2 (8-63)||(28677626-28677681)
chr2 (1-40)||(30538163-30538202)
chr2 (2-69)||(40158760-40158827)
chr2 (1-68)||(41032917-41032984)
chr2 (1-52)||(43065428-43065479)
chr2 (1-39)||(1939323-1939361)
chr2 (1-47)||(7283037-7283083)
chr2 (1-43)||(10285901-10285943)
chr2 (25-67)||(11863967-11864009)
chr2 (1-75)||(32106754-32106828)
chr2 (19-69)||(32837382-32837432)
chr2 (7-69)||(38077034-38077096)
chr2 (9-79)||(41809196-41809266)
chr2 (1-58)||(12140573-12140630)
chr2 (24-69)||(13866942-13866987)
chr2 (32-65)||(27317452-27317485)
chr2 (36-65)||(31744375-31744404)
chr2 (17-61)||(1494415-1494459)
chr2 (17-77)||(4350747-4350807)
chr2 (1-67)||(7928260-7928328)
chr2 (6-78)||(32633526-32633598)
chr2 (1-68)||(40682356-40682424)
[»] chr8 (37 HSPs)
chr8 (3-68)||(8629499-8629564)
chr8 (1-68)||(30918154-30918220)
chr8 (12-116)||(16162812-16162912)
chr8 (1-79)||(11569408-11569486)
chr8 (1-78)||(9700042-9700119)
chr8 (9-65)||(9572919-9572975)
chr8 (1-64)||(32840951-32841015)
chr8 (1-64)||(779027-779090)
chr8 (23-115)||(2487927-2488015)
chr8 (1-68)||(11770973-11771040)
chr8 (1-68)||(14949907-14949974)
chr8 (1-79)||(2091804-2091882)
chr8 (2-67)||(41442416-41442481)
chr8 (32-88)||(6526194-6526250)
chr8 (1-57)||(8255433-8255489)
chr8 (1-69)||(27119890-27119958)
chr8 (16-68)||(30987953-30988005)
chr8 (1-68)||(6950363-6950430)
chr8 (16-79)||(7853435-7853498)
chr8 (1-64)||(7918412-7918475)
chr8 (1-88)||(28769281-28769368)
chr8 (19-78)||(34770927-34770986)
chr8 (1-68)||(39551171-39551238)
chr8 (2-76)||(778431-778505)
chr8 (33-87)||(2482936-2482990)
chr8 (19-69)||(8558719-8558769)
chr8 (1-67)||(11185262-11185328)
chr8 (1-79)||(13000375-13000453)
chr8 (26-68)||(35534574-35534616)
chr8 (1-30)||(3600738-3600767)
chr8 (1-30)||(14339605-14339634)
chr8 (1-66)||(31875559-31875624)
chr8 (3-68)||(39049315-39049380)
chr8 (19-76)||(40253167-40253224)
chr8 (1-41)||(2594986-2595026)
chr8 (1-69)||(11376744-11376812)
chr8 (47-79)||(12833447-12833479)
[»] chr6 (35 HSPs)
chr6 (1-78)||(2460103-2460180)
chr6 (1-78)||(3738110-3738187)
chr6 (1-77)||(4080957-4081033)
chr6 (1-77)||(10031773-10031849)
chr6 (2-69)||(769180-769247)
chr6 (6-115)||(27595483-27595591)
chr6 (6-115)||(27693355-27693463)
chr6 (2-79)||(30863288-30863365)
chr6 (16-69)||(32917253-32917306)
chr6 (9-66)||(33500444-33500501)
chr6 (1-69)||(281809-281877)
chr6 (1-57)||(4246451-4246507)
chr6 (1-69)||(8035109-8035177)
chr6 (1-77)||(32171336-32171412)
chr6 (17-69)||(33116641-33116693)
chr6 (9-65)||(33832238-33832294)
chr6 (1-69)||(33887871-33887939)
chr6 (1-60)||(9027619-9027678)
chr6 (1-40)||(9667975-9668014)
chr6 (1-68)||(20368142-20368209)
chr6 (1-51)||(1575936-1575986)
chr6 (3-61)||(2263235-2263293)
chr6 (1-43)||(5566164-5566206)
chr6 (1-51)||(31624131-31624181)
chr6 (1-59)||(32577957-32578015)
chr6 (1-59)||(34939554-34939612)
chr6 (10-79)||(26559190-26559259)
chr6 (16-69)||(27857414-27857467)
chr6 (1-30)||(31583720-31583749)
chr6 (8-61)||(33737618-33737671)
chr6 (1-78)||(34403896-34403973)
chr6 (1-29)||(2160938-2160966)
chr6 (1-41)||(3528844-3528884)
chr6 (9-61)||(8348275-8348327)
chr6 (8-52)||(20377898-20377942)
[»] chr7 (32 HSPs)
chr7 (1-77)||(25670539-25670615)
chr7 (1-77)||(33894668-33894744)
chr7 (9-80)||(36537957-36538028)
chr7 (6-79)||(28076600-28076673)
chr7 (16-79)||(28340372-28340434)
chr7 (16-78)||(23214911-23214973)
chr7 (7-77)||(28844537-28844607)
chr7 (1-78)||(44808199-44808276)
chr7 (1-77)||(36598309-36598385)
chr7 (1-65)||(46082077-46082141)
chr7 (2-82)||(46223021-46223101)
chr7 (1-68)||(48157082-48157149)
chr7 (1-59)||(6857310-6857368)
chr7 (6-40)||(8341874-8341908)
chr7 (1-51)||(15740390-15740440)
chr7 (32-69)||(4970752-4970789)
chr7 (1-62)||(22551373-22551434)
chr7 (16-69)||(27508293-27508346)
chr7 (1-78)||(30496746-30496823)
chr7 (9-69)||(33645921-33645982)
chr7 (1-66)||(39360064-39360129)
chr7 (1-65)||(3468655-3468719)
chr7 (1-69)||(12242285-12242353)
chr7 (1-68)||(19022546-19022614)
chr7 (1-53)||(19719047-19719099)
chr7 (36-68)||(20526523-20526555)
chr7 (1-69)||(27626084-27626152)
chr7 (17-69)||(29574586-29574638)
chr7 (35-67)||(30748997-30749029)
chr7 (1-68)||(34035958-34036026)
chr7 (1-65)||(34754775-34754839)
chr7 (1-41)||(47134746-47134786)
[»] chr5 (24 HSPs)
chr5 (7-69)||(37611176-37611238)
chr5 (7-69)||(37787906-37787968)
chr5 (9-77)||(12459954-12460022)
chr5 (1-68)||(4273339-4273406)
chr5 (1-54)||(13604825-13604878)
chr5 (1-69)||(16457574-16457642)
chr5 (4-68)||(39248143-39248207)
chr5 (14-77)||(10152388-10152451)
chr5 (14-69)||(11095456-11095511)
chr5 (1-40)||(25705649-25705688)
chr5 (1-68)||(37526161-37526228)
chr5 (1-68)||(37690598-37690665)
chr5 (16-78)||(32172709-32172771)
chr5 (1-51)||(38766524-38766574)
chr5 (3-40)||(2092535-2092572)
chr5 (8-69)||(10907426-10907487)
chr5 (7-52)||(29363055-29363100)
chr5 (8-77)||(36639570-36639639)
chr5 (16-69)||(38047840-38047893)
chr5 (1-77)||(499684-499760)
chr5 (1-69)||(10125679-10125747)
chr5 (9-57)||(23160718-23160766)
chr5 (1-65)||(29590594-29590658)
chr5 (1-41)||(34690914-34690954)
[»] scaffold0311 (1 HSPs)
scaffold0311 (1-69)||(10578-10646)
[»] scaffold0608 (1 HSPs)
scaffold0608 (9-61)||(9606-9658)
[»] scaffold0147 (1 HSPs)
scaffold0147 (2-40)||(12694-12732)
[»] scaffold0286 (1 HSPs)
scaffold0286 (1-29)||(16151-16179)


Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 34707525 - 34707298
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatgccggtggatagataaattcaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34707525 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatgccggtggatagataaattcaaat 34707426  T
Q  101 aaaccaatccaaacagacgcttagaaggccaaacctaccttgttgcaatctaaaggtacataatttccatcctcaaatttgtaataaacaccatctttgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34707425 aaaccaatccaaacagacgcttagaaggccaaacctaccttgttgcaatctaaaggtacataatttccatcctcaaatttgtaataaacaccatctttgg 34707326  T
Q  201 tgctatagtaccagccagcattaggatc 228  Q
    ||||||||||||||||||||||||||||    
T  34707325 tgctatagtaccagccagcattaggatc 34707298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 37273175 - 37273252
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatgc 78  Q
    |||||||||||||||||||||||||||||| ||||||||| || ||| |||| ||||||||||||| || ||||||||    
T  37273175 ataagttgaaaacaacttatggacatgtcataagttgtttccataagctctcccaaacagtctcaccagtgcttatgc 37273252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 24281089 - 24281176
Alignment:
Q  2 taagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatgccggtggataga 89  Q
    |||||||||||||||||||||| || ||| |||||||||||| ||| ||||||||||| || |||||| |||||| || || ||||||    
T  24281089 taagttgaaaacaacttatggagatatcataagttgttttcataagctctctcaaacaatcacacaagtgcttataccagtagataga 24281176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 40880977 - 40880912
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcac 66  Q
    ||||||| ||||||||||| || ||||||| |||||||||||| ||| ||||||||||||||||||    
T  40880977 ataagtttaaaacaacttacggtcatgtcataagttgttttcataagctctctcaaacagtctcac 40880912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 36200137 - 36200205
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaag 69  Q
    ||||| |||||||||||||||||||||||| ||||||||| |||||  |||||| |||| |||||||||    
T  36200137 ataagctgaaaacaacttatggacatgtcataagttgtttacaaaaactctctccaacattctcacaag 36200205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 44014816 - 44014716
Alignment:
Q  12 acaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatgccggtggatagataaattcaaataaaccaatcca 111  Q
    |||||||||| ||| |||| ||| |||||||| ||||| ||||||||||||||||||| | ||||||  |    |||||||| |||||||| ||||||||    
T  44014816 acaacttatgaacaggtcataagctgttttcataagttttctcaaacagtctcacaagtgtttatgctag----tagataaactcaaataagccaatcca 44014721  T
Q  112 aacag 116  Q
    |||||    
T  44014720 aacag 44014716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 25183001 - 25182948
Alignment:
Q  16 cttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaag 69  Q
    |||||||| |||||| |||||||||||| ||| |||||||||||||||||||||    
T  25183001 cttatggatatgtcataagttgttttcataagctctctcaaacagtctcacaag 25182948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 41724253 - 41724321
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaag 69  Q
    ||||| |||||||||||||||||||||||| ||||||||| || ||||| || ||||| |||| |||||    
T  41724253 ataagctgaaaacaacttatggacatgtcataagttgtttccataagttttcacaaactgtctgacaag 41724321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 11039368 - 11039301
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaa 68  Q
    ||||| |||||||||||||||||||||||| ||  ||||| || ||| ||| ||||||||||||||||    
T  11039368 ataagctgaaaacaacttatggacatgtcataatatgtttccataagctctttcaaacagtctcacaa 11039301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 53762423 - 53762361
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtct 63  Q
    |||||||||||||| |||||| |||||||| ||| ||||||||||| ||||| | ||||||||    
T  53762423 ataagttgaaaacagcttatgaacatgtcataagctgttttcaaaatttctccctaacagtct 53762361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 1810025 - 1810086
Alignment:
Q  8 gaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaag 69  Q
    |||||||||| |||||||||||| ||||||||| |  ||| ||||||||| |||||||||||    
T  1810025 gaaaacaactcatggacatgtcataagttgtttccgtaagctctctcaaatagtctcacaag 1810086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 50015936 - 50016005
Alignment:
Q  10 aaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatgcc 79  Q
    ||||| |||||  |||||||| | ||| |||||| ||||||||||||||||||||||||| | |||||||    
T  50015936 aaacatcttataaacatgtcatacgttcttttcataagttctctcaaacagtctcacaagtgtttatgcc 50016005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 50211807 - 50211852
Alignment:
Q  32 aagttgttttcaaaagttctctcaaacagtctcacaagcgcttatg 77  Q
    |||||||||||| ||||||||||||||||||| ||||| |||||||    
T  50211807 aagttgttttcataagttctctcaaacagtcttacaagtgcttatg 50211852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 47513694 - 47513762
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaag 69  Q
    |||| |||||||||||||||| || ||||| || ||||||||| |||| ||| | ||||||||||||||    
T  47513694 ataaattgaaaacaacttatgaacgtgtcataacttgttttcataagtcctcccgaacagtctcacaag 47513762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 118
Target Start/End: Original strand, 23793685 - 23793772
Alignment:
Q  31 caagttgttttcaaaagttctctcaaacagtctcacaagcgcttatgccggtggatagataaattcaaataaaccaatccaaacagac 118  Q
    |||||||||| ||  || ||||||||||||||||||||| | ||| |||||| |||| | |||  |||||||  ||||||||||||||    
T  23793685 caagttgtttccattagctctctcaaacagtctcacaagtggttacgccggtagataaacaaacacaaataagtcaatccaaacagac 23793772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 29771879 - 29771918
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttt 40  Q
    |||||||||||||||||||||||||||||  |||||||||    
T  29771879 ataagttgaaaacaacttatggacatgtcctaagttgttt 29771918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 42817251 - 42817192
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacag 60  Q
    ||||| |||||||||||||||||||||||| | | ||||| || ||| ||||||||||||    
T  42817251 ataagctgaaaacaacttatggacatgtcatatgctgtttccataagctctctcaaacag 42817192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 3015872 - 3015830
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttca 43  Q
    ||||| |||||||| ||||||||||||||| ||||||||||||    
T  3015872 ataagatgaaaacatcttatggacatgtcataagttgttttca 3015830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 13804818 - 13804856
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgtt 39  Q
    |||||||||||||| ||||||||||||||| ||||||||    
T  13804818 ataagttgaaaacagcttatggacatgtcataagttgtt 13804856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 38971299 - 38971377
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatgcc 79  Q
    |||||||||||||| |||| | |||||| | ||  |||||||||||  | ||||| ||||||||||||| |||||||||    
T  38971299 ataagttgaaaacagcttacgaacatgttataaactgttttcaaaaactatctcagacagtctcacaagtgcttatgcc 38971377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 41057195 - 41057273
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgtttt-caaaagttctctcaaacagtctcacaagcgcttatgc 78  Q
    ||||| |||||| |||||||| ||||||||| || | |||| || || ||||| |||||||||||||||| ||||||||    
T  41057195 ataagctgaaaataacttatgaacatgtcacgagctatttttcacaaattctcccaaacagtctcacaagtgcttatgc 41057273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 43046720 - 43046774
Alignment:
Q  14 aacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaa 68  Q
    |||||||| |||| ||| ||| |||||||| |||||||| |||||||||||||||    
T  43046720 aacttatgaacatttcaaaagctgttttcataagttctcccaaacagtctcacaa 43046774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 47132035 - 47132097
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtct 63  Q
    ||||| ||||||||  ||||||| ||| || |||||||||||| ||||||||||||| |||||    
T  47132035 ataagctgaaaacagtttatggatatgacataagttgttttcataagttctctcaaatagtct 47132097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 47249507 - 47249457
Alignment:
Q  9 aaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaaca 59  Q
    ||||||||||||| |||||||| |||| ||||||| ||||||| |||||||    
T  47249507 aaaacaacttatgaacatgtcataagtggttttcataagttctttcaaaca 47249457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 2152205 - 2152132
Alignment:
Q  3 aagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttat 76  Q
    |||||||||||| |||| | |||||||| |||||||||||| ||  | ||||||  ||||||||||| ||||||    
T  2152205 aagttgaaaacagcttacgaacatgtcataagttgttttcataaaatatctcaattagtctcacaagtgcttat 2152132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 21574546 - 21574595
Alignment:
Q  16 cttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctca 65  Q
    |||||| |||||||| |||||||||||| ||| |||| ||||||||||||    
T  21574546 cttatgaacatgtcataagttgttttcataagctctcccaaacagtctca 21574595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 41644474 - 41644397
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatgc 78  Q
    ||||| |||||||| |||||| | ||||| ||||||||||| | ||||||||  ||||||| || |||| ||||||||    
T  41644474 ataagctgaaaacagcttatgaaaatgtcccaagttgtttttataagttctcctaaacagtgtctcaagtgcttatgc 41644397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 45783384 - 45783347
Alignment:
Q  45 aagttctctcaaacagtctcacaagcgcttatgccggt 82  Q
    ||||||||||||||||||||||||||| || |||||||    
T  45783384 aagttctctcaaacagtctcacaagcgtttgtgccggt 45783347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 5391920 - 5391968
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagtt 49  Q
    |||||||||||||| |||||| |||||||| ||| |||||||| |||||    
T  5391920 ataagttgaaaacagcttatgaacatgtcataagctgttttcataagtt 5391968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 14548726 - 14548682
Alignment:
Q  25 atgtcacaagttgttttcaaaagttctctcaaacagtctcacaag 69  Q
    |||||| | |||||||||| ||| |||||||||||||||||||||    
T  14548726 atgtcatacgttgttttcataagctctctcaaacagtctcacaag 14548682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 21754760 - 21754800
Alignment:
Q  3 aagttgaaaacaacttatggacatgtcacaagttgttttca 43  Q
    ||||||||||||||| ||| |||||||| ||||||||||||    
T  21754760 aagttgaaaacaactgatgaacatgtcataagttgttttca 21754800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 21872308 - 21872248
Alignment:
Q  17 ttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatg 77  Q
    |||||||||||||| ||| | |||||||||| | |  |||||||||||||||| |||||||    
T  21872308 ttatggacatgtcataagctattttcaaaagcttttccaaacagtctcacaagtgcttatg 21872248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 24624251 - 24624319
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaag 69  Q
    ||||| ||||||||  |||||||||||||| ||| |||||||| ||| |||  |||||||||| |||||    
T  24624251 ataagctgaaaacagtttatggacatgtcataagctgttttcataagctcttccaaacagtcttacaag 24624319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 30750047 - 30750083
Alignment:
Q  7 tgaaaacaacttatggacatgtcacaagttgttttca 43  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  30750047 tgaaaacagcttatggacatgtcataagttgttttca 30750083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 43115097 - 43115165
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaag 69  Q
    ||||| ||||||||| |||||||||||||| ||||||||| || ||  |||  |||||| |||||||||    
T  43115097 ataagctgaaaacaagttatggacatgtcataagttgtttccataaactcttccaaacaatctcacaag 43115165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 41)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 4868441 - 4868550
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatgccggtggatagataaattcaaat 100  Q
    |||||||||||||||||||| ||||||||| |||||| ||||| ||  ||||||||||||||||||||| || |||    ||  ||||||||||||||||    
T  4868441 ataagttgaaaacaacttattgacatgtcataagttg-tttcataaactctctcaaacagtctcacaagtgcctat----gtcaatagataaattcaaat 4868535  T
Q  101 aaaccaatccaaaca 115  Q
    ||| |||||||||||    
T  4868536 aaatcaatccaaaca 4868550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 42336656 - 42336731
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttat 76  Q
    |||||| ||||||||||| ||||||||||| |||||||||||| ||||| |||||||||||| |||||| ||||||    
T  42336656 ataagtcgaaaacaacttttggacatgtcataagttgttttcataagttatctcaaacagtcgcacaagtgcttat 42336731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 31517769 - 31517691
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatgcc 79  Q
    ||||| |||||||| |||||| ||||||||  ||||||||| | |||||||| |||||||||||||||| |||||||||    
T  31517769 ataagctgaaaacagcttatgaacatgtcatgagttgttttgataagttctcccaaacagtctcacaagtgcttatgcc 31517691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 32515470 - 32515394
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatg 77  Q
    |||||||||||||||||||| ||||||||| | | ||||| || ||| |||| |||||||||||||||| |||||||    
T  32515470 ataagttgaaaacaacttattgacatgtcatacgctgtttccataagctctcccaaacagtctcacaagtgcttatg 32515394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 35925731 - 35925810
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagtt-ctctcaaacagtctcacaagcgcttatgcc 79  Q
    |||||||||||||| |||||| |||||||| ||| |||||||| ||||| ||| || |||||||| ||||||||||||||    
T  35925731 ataagttgaaaacagcttatgaacatgtcataagctgttttcataagttcctcccagacagtctctcaagcgcttatgcc 35925810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 49692075 - 49692004
Alignment:
Q  7 tgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatgc 78  Q
    |||||||||  ||||||||||||| ||| | |||||| |||||||||||||||||||||||||  |||||||    
T  49692075 tgaaaacaaactatggacatgtcataagctattttcataagttctctcaaacagtctcacaagttcttatgc 49692004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 68
Target Start/End: Original strand, 38001643 - 38001704
Alignment:
Q  7 tgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaa 68  Q
    ||||||||||||||| ||| |||| ||| |||||||| |||||||| |||||||||||||||    
T  38001643 tgaaaacaacttatgaacaggtcataagctgttttcataagttctcccaaacagtctcacaa 38001704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 37811893 - 37811960
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaa 68  Q
    ||||||||||||||  ||||| |||||||| ||| |||||||| |||||||||||| |||| ||||||    
T  37811893 ataagttgaaaacagtttatgaacatgtcataagctgttttcataagttctctcaaccagtatcacaa 37811960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 4549271 - 4549333
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtct 63  Q
    ||||| |||||||||||||| ||||||||| || |||||| |||||||||||| || ||||||    
T  4549271 ataagctgaaaacaacttatagacatgtcataaattgtttccaaaagttctcttaagcagtct 4549333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 15579523 - 15579585
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtct 63  Q
    ||||| ||| |||||||||||||||||||| ||||||||| || ||| |||| ||||||||||    
T  15579523 ataagctgagaacaacttatggacatgtcataagttgtttccacaagctctcccaaacagtct 15579585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 32 - 115
Target Start/End: Original strand, 36070253 - 36070332
Alignment:
Q  32 aagttgttttcaaaagttctctcaaacagtctcacaagcgcttatgccggtggatagataaattcaaataaaccaatccaaaca 115  Q
    |||||||||||| ||||||||  ||||||||||||||| ||||||||| |     ||||||  |||||||||||||||||||||    
T  36070253 aagttgttttcataagttctcctaaacagtctcacaagtgcttatgccag----aagataatatcaaataaaccaatccaaaca 36070332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 38170713 - 38170651
Alignment:
Q  7 tgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaag 69  Q
    ||||||||||||||| |||||||| ||| |||||||| ||| |||| ||| ||||||||||||    
T  38170713 tgaaaacaacttatgaacatgtcataagctgttttcataagctctcccaagcagtctcacaag 38170651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 3224464 - 3224545
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatgccggt 82  Q
    ||||| ||| |||||||||||||||||||| |||| ||||  | || |||||||||| ||| ||||||| ||||||| ||||    
T  3224464 ataagctgagaacaacttatggacatgtcataagtagtttgtataaattctctcaaatagtgtcacaagtgcttatgtcggt 3224545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 17420244 - 17420321
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatgc 78  Q
    ||||||||||||||| |||||||||||| | |||||||||||| ||| |||   ||||||||| ||||| | ||||||    
T  17420244 ataagttgaaaacaatttatggacatgtaataagttgttttcataagctcttcaaaacagtctaacaagtgtttatgc 17420321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 29723530 - 29723607
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatgc 78  Q
    ||||||||||||||  |||||||||||||| ||| ||||| ||  |||||| |||||| || ||||||| ||||||||    
T  29723530 ataagttgaaaacagtttatggacatgtcataagctgtttccattagttctttcaaactgtatcacaagtgcttatgc 29723607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 4481979 - 4482031
Alignment:
Q  9 aaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagt 61  Q
    |||||| |||||| |||||| | |||||||||||| |||||||||||||||||    
T  4481979 aaaacagcttatgaacatgtaataagttgttttcataagttctctcaaacagt 4482031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 10199437 - 10199361
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatg 77  Q
    ||||| ||||||||||||||| |||||||| ||| | ||||||  ||||||| |||| ||| ||||||| |||||||    
T  10199437 ataagctgaaaacaacttatgaacatgtcataagctattttcatgagttctcccaaatagtgtcacaagtgcttatg 10199361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 14737740 - 14737680
Alignment:
Q  16 cttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttat 76  Q
    ||||||||||||| | ||||| |||||| ||||| || |||||||||||||||| ||||||    
T  14737740 cttatggacatgttataagttattttcacaagttttcccaaacagtctcacaagtgcttat 14737680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 28689481 - 28689421
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagt 61  Q
    ||||| |||||||||||||||||||||||| ||| ||||| |  ||||||||| |||||||    
T  28689481 ataagctgaaaacaacttatggacatgtcataagctgtttccgtaagttctctaaaacagt 28689421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 40414051 - 40413983
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaag 69  Q
    |||||||||||||||||||||||||| |||  ||||| ||||  |||||||| |||||| ||| |||||    
T  40414051 ataagttgaaaacaacttatggacatttcatcagttgctttcgtaagttctcccaaacaatcttacaag 40413983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 4549889 - 4549948
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacag 60  Q
    ||||| ||||||||||||||| |||||||| ||  |||||||| |||||||| |||||||    
T  4549889 ataagctgaaaacaacttatgaacatgtcataatctgttttcagaagttctcccaaacag 4549948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 78
Target Start/End: Original strand, 6659727 - 6659798
Alignment:
Q  7 tgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatgc 78  Q
    ||||||||||||||||||||| || | |||||| ||| ||| | || |||| ||||||||||| ||||||||    
T  6659727 tgaaaacaacttatggacatgccaaatgttgttatcataagctatcccaaatagtctcacaagtgcttatgc 6659798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 79
Target Start/End: Complemental strand, 43371885 - 43371842
Alignment:
Q  36 tgttttcaaaagttctctcaaacagtctcacaagcgcttatgcc 79  Q
    |||||||| ||| ||||||||||||||||||||| |||||||||    
T  43371885 tgttttcataagctctctcaaacagtctcacaagtgcttatgcc 43371842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 4445749 - 4445823
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgctta 75  Q
    |||||||||||||| ||| || |||||| | ||| || ||||| || ||||| |||||||||||||||| |||||    
T  4445749 ataagttgaaaacagcttctgaacatgttataagctgctttcataaattctcccaaacagtctcacaagtgctta 4445823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 4768858 - 4768780
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatgcc 79  Q
    ||||| ||||||||| |||||||||||||  ||| |||||||  ||||| || ||||| |||||||||| | |||||||    
T  4768858 ataagctgaaaacaagttatggacatgtcgtaagctgttttcgtaagttttcccaaactgtctcacaagtgtttatgcc 4768780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 29635388 - 29635446
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaaca 59  Q
    ||||| ||||||||||||||  |||||||| || ||||||||| || ||||||||||||    
T  29635388 ataagctgaaaacaacttataaacatgtcataacttgttttcataaattctctcaaaca 29635446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 29929644 - 29929582
Alignment:
Q  7 tgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaag 69  Q
    ||||||||||||||| ||||||||  ||||||||||| ||| ||||  ||||||| |||||||    
T  29929644 tgaaaacaacttatgcacatgtcatgagttgttttcataagctctccaaaacagtatcacaag 29929582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 33108651 - 33108601
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttct 51  Q
    |||||||||||||||||||||| |||| ||  ||||||||||| |||||||    
T  33108651 ataagttgaaaacaacttatggtcatggcatgagttgttttcataagttct 33108601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 123
Target Start/End: Complemental strand, 3052648 - 3052611
Alignment:
Q  86 tagataaattcaaataaaccaatccaaacagacgctta 123  Q
    ||||||| ||||||||||||||||||||||||| ||||    
T  3052648 tagataatttcaaataaaccaatccaaacagactctta 3052611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 3110039 - 3110108
Alignment:
Q  8 gaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatg 77  Q
    |||||||| |||||||  ||||||||||||||| || |||||||  |||||||||||  ||| |||||||    
T  3110039 gaaaacaagttatggatgtgtcacaagttgtttgcataagttcttacaaacagtctcggaagtgcttatg 3110108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 4034029 - 4033968
Alignment:
Q  18 tatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatgcc 79  Q
    |||||||| |||| ||||| |||||| ||| ||||||||||| ||||||||| | |||||||    
T  4034029 tatggacaagtcataagttattttcataagctctctcaaacaatctcacaagtgtttatgcc 4033968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 28075760 - 28075813
Alignment:
Q  16 cttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaag 69  Q
    |||||||||| |||| |||||||||||| |||||  ||||||||| ||||||||    
T  28075760 cttatggacacgtcataagttgttttcacaagttaactcaaacagcctcacaag 28075813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 35669013 - 35669075
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctca 65  Q
    ||||||||||||||| |||||||||| ||| ||| || ||||| ||||  |||||||||||||||    
T  35669013 ataagttgaaaacaatttatggacatatcataagctgctttcataagt--tctcaaacagtctca 35669075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 42397767 - 42397832
Alignment:
Q  2 taagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcaca 67  Q
    |||| ||||||||||||||| ||||| || |||||||||  ||||| |||| || |||||||||||    
T  42397767 taagctgaaaacaacttatgaacatgccataagttgtttctaaaagctctcccagacagtctcaca 42397832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 113
Target Start/End: Complemental strand, 4549567 - 4549462
Alignment:
Q  5 gttgaaaacaactt-atggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatgccggtggatagataaattcaaataaa 103  Q
    |||||||||||||| || ||||||||| |||||||||  | ||| |||| |||||||||||| ||  ||||||||| |    |||||||  ||||||||     
T  4549567 gttgaaaacaactttatagacatgtcataagttgtttctataagctctcccaaacagtctcagaaatgcttatgccag----tagataatctcaaataag 4549472  T
Q  104 ccaatccaaa 113  Q
    ||||||||||    
T  4549471 ccaatccaaa 4549462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 4699636 - 4699568
Alignment:
Q  9 aaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatg 77  Q
    |||||| |||||| |||||||| |||||||||||| ||||  | |||||  || |||||||||||||||    
T  4699636 aaaacagcttatgaacatgtcataagttgttttcataagtattatcaaattgtatcacaagcgcttatg 4699568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 6262061 - 6262129
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaag 69  Q
    |||||||||||| | |||||| |||||||| |||||||| ||| ||| |||   |||||||||||||||    
T  6262061 ataagttgaaaatagcttatgaacatgtcataagttgttctcataagctcttgtaaacagtctcacaag 6262129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 26779954 - 26779891
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctca 65  Q
    ||||||||||||||||||||| ||  |||| ||| |||||||| || ||||| ||||||||||||    
T  26779954 ataagttgaaaacaacttatgtac-ggtcataaggtgttttcagaaattctcccaaacagtctca 26779891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 33185987 - 33185927
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagt 61  Q
    ||||||||||||||  ||||||| |||||| || ||||||||| ||  |||||||||||||    
T  33185987 ataagttgaaaacaggttatggaaatgtcataatttgttttcataaactctctcaaacagt 33185927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 47917277 - 47917317
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgtttt 41  Q
    ||||||||||||||||||||| |||||||| ||||| ||||    
T  47917277 ataagttgaaaacaacttatgaacatgtcataagttttttt 47917317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 50644252 - 50644216
Alignment:
Q  32 aagttgttttcaaaagttctctcaaacagtctcacaa 68  Q
    |||||||||||| |||||||| |||||||||||||||    
T  50644252 aagttgttttcataagttctcccaaacagtctcacaa 50644216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 2996614 - 2996690
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatg 77  Q
    |||||||||||| | ||||||||||||||| |||||||||||| ||| ||||||||||||||||| ||| |||||||    
T  2996614 ataagttgaaaaaagcttatggacatgtcataagttgttttcataagctctctcaaacagtctcaaaagtgcttatg 2996690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 27123381 - 27123304
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatgc 78  Q
    |||||||||||||||||||  ||||||||| ||||||||| || ||| |||||||||||||||||||||  |||||||    
T  27123381 ataagttgaaaacaacttaaagacatgtcataagttgtttccataagctctctcaaacagtctcacaagtacttatgc 27123304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 33534198 - 33534130
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaag 69  Q
    ||||| ||||||||||||||||| ||||||||| ||||||||| ||| ||||||||| | |||||||||    
T  33534198 ataagctgaaaacaacttatggatatgtcacaatttgttttcataagctctctcaaatactctcacaag 33534130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 6428071 - 6428134
Alignment:
Q  13 caacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttat 76  Q
    |||||||||||||||||| |||||||||||| ||  |||||||||| |||||||||| ||||||    
T  6428071 caacttatggacatgtcataagttgttttcataatctctctcaaactgtctcacaagtgcttat 6428134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 4691889 - 4691957
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaag 69  Q
    ||||| |||||||||| ||||| ||||||| ||||||||| || ||||| ||||||| |||||||||||    
T  4691889 ataagctgaaaacaacatatgggcatgtcataagttgtttccataagttttctcaaatagtctcacaag 4691957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 118
Target Start/End: Complemental strand, 7368079 - 7367970
Alignment:
Q  5 gttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatgccggtggatagataaattcaaataaac 104  Q
    ||||||| || |||||  |||||||| ||| ||||||||  || |||| |||||||||||||||||| ||||||| |    |||||||| ||||||||      
T  7368079 gttgaaagcagcttataaacatgtcataagctgttttcatgagctctcccaaacagtctcacaagcgtttatgcctg----tagataaactcaaataagt 7367984  T
Q  105 caatccaaacagac 118  Q
    ||||||||||||||    
T  7367983 caatccaaacagac 7367970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 39886682 - 39886615
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaa 68  Q
    ||||||||||||||| ||||| |||||||| ||  || ||||| ||||||||||||||||| ||||||    
T  39886682 ataagttgaaaacaatttatgaacatgtcataaaatgctttcacaagttctctcaaacagtgtcacaa 39886615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 69
Target Start/End: Original strand, 1137759 - 1137821
Alignment:
Q  7 tgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaag 69  Q
    ||||||||||||||| |||||||| ||| |||||||| ||||||||  ||||||| |||||||    
T  1137759 tgaaaacaacttatgaacatgtcataagatgttttcataagttctcctaaacagtgtcacaag 1137821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 23967029 - 23966927
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatgccggtggatagataaattcaaat 100  Q
    |||||||||||||||||||||  |||||    |  |||||| | || |||||||||||||| |||||||  |||||||| || |||||||||| ||||||    
T  23967029 ataagttgaaaacaacttatgagcatgttttgaaatgtttttataaattctctcaaacagtttcacaagtacttatgccagtagatagataaactcaaat 23966930  T
Q  101 aaa 103  Q
    |||    
T  23966929 aaa 23966927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 6987770 - 6987693
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatgc 78  Q
    |||||||||||| |  |||||||||||||| ||||||| | || ||| |||| ||||||||||||||| | |||||||    
T  6987770 ataagttgaaaatagtttatggacatgtcataagttgtatccataagctctcccaaacagtctcacaaacacttatgc 6987693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 25583639 - 25583699
Alignment:
Q  7 tgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcaca 67  Q
    |||||||||||| ||||||||||| ||||||||| || |||  ||| ||||||||||||||    
T  25583639 tgaaaacaacttttggacatgtcataagttgtttgcataagcgctcccaaacagtctcaca 25583699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 1965982 - 1966048
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaa 68  Q
    ||||||| |||||| |||||| |||||||| |||||||||||| ||| || || ||||||||||||||    
T  1965982 ataagttaaaaacagcttatgaacatgtcataagttgttttcataagctc-ctaaaacagtctcacaa 1966048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 23819130 - 23819197
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaa 68  Q
    ||||| |||||||||||||||||||||||| ||| |||||||  ||  |||  |||||||||||||||    
T  23819130 ataagatgaaaacaacttatggacatgtcataagctgttttcttaaactcttccaaacagtctcacaa 23819197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 28300328 - 28300261
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaa 68  Q
    ||||||||||||||||||| | |||||||| | | |||||||| || ||||||||| ||||| |||||    
T  28300328 ataagttgaaaacaacttaagaacatgtcataggctgttttcataaattctctcaatcagtcacacaa 28300261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 37863982 - 37863927
Alignment:
Q  2 taagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaa 57  Q
    |||| ||||||||||||||| || ||||| ||| |||||||| |||||||||||||    
T  37863982 taaggtgaaaacaacttatgaacgtgtcataagctgttttcataagttctctcaaa 37863927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 19304973 - 19305043
Alignment:
Q  7 tgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatg 77  Q
    |||||||||||||||||||||||| ||| ||||| || || ||||| || ||| ||||||||  |||||||    
T  19304973 tgaaaacaacttatggacatgtcataagctgtttccacaaattctcccacacaatctcacaaatgcttatg 19305043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 20656078 - 20656116
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgtt 39  Q
    |||||||||| ||||||||||||||||||| ||||||||    
T  20656078 ataagttgaagacaacttatggacatgtcataagttgtt 20656116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 2841667 - 2841732
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcac 66  Q
    ||||| |||||||||||||| ||||||||| |||||| ||||| ||  |||| |||||| ||||||    
T  2841667 ataagctgaaaacaacttattgacatgtcataagttgctttcataaactctcgcaaacaatctcac 2841732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 79
Target Start/End: Complemental strand, 3549547 - 3549506
Alignment:
Q  38 ttttcaaaagttctctcaaacagtctcacaagcgcttatgcc 79  Q
    |||||| ||||||||||||||||||||| ||| |||||||||    
T  3549547 ttttcataagttctctcaaacagtctcataagtgcttatgcc 3549506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 4071925 - 4071994
Alignment:
Q  7 tgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttat 76  Q
    |||||||||||||   |||  ||| ||| |||||||| ||| ||||||||||||||||||||| ||||||    
T  4071925 tgaaaacaacttaccaacaaatcataagctgttttcataagctctctcaaacagtctcacaagtgcttat 4071994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 22471350 - 22471391
Alignment:
Q  36 tgttttcaaaagttctctcaaacagtctcacaagcgcttatg 77  Q
    |||||||| |||||||| |||||||||||||||| |||||||    
T  22471350 tgttttcataagttctcccaaacagtctcacaagtgcttatg 22471391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 41097285 - 41097212
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgctt 74  Q
    |||||||||||| | |||||||||||||||  ||||||||  | ||| |||| | |||||||||||||| ||||    
T  41097285 ataagttgaaaatagcttatggacatgtcattagttgtttctataagctctcccgaacagtctcacaagtgctt 41097212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 47399557 - 47399594
Alignment:
Q  32 aagttgttttcaaaagttctctcaaacagtctcacaag 69  Q
    |||||||||||| |||||||||||| ||||||||||||    
T  47399557 aagttgttttcacaagttctctcaatcagtctcacaag 47399594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 1408333 - 1408285
Alignment:
Q  17 ttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctca 65  Q
    |||||||||||| | ||| |||||||| || ||||||||||||||||||    
T  1408333 ttatggacatgtaataagctgttttcataaattctctcaaacagtctca 1408285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 3176133 - 3176065
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaag 69  Q
    ||||| |||||||||||||| |||||| || ||| |||||||| ||| ||||  ||||||| |||||||    
T  3176133 ataagctgaaaacaacttatagacatgacataagatgttttcataagctctcctaaacagtttcacaag 3176065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 10172112 - 10172180
Alignment:
Q  10 aaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatgc 78  Q
    ||||||| |||| |||||||||||| ||||| || ||| | | ||||||||| ||||||| ||||||||    
T  10172112 aaacaacctatgaacatgtcacaagctgtttccataagctatatcaaacagtttcacaagtgcttatgc 10172180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 31642258 - 31642294
Alignment:
Q  25 atgtcacaagttgttttcaaaagttctctcaaacagt 61  Q
    |||||| |||||||||||| |||||||||||||||||    
T  31642258 atgtcataagttgttttcataagttctctcaaacagt 31642294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 42461292 - 42461368
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatg 77  Q
    ||||| ||||| ||||||||| ||| |||| | | | |||||| |||||||| |||||||||||| ||| |||||||    
T  42461292 ataagctgaaatcaacttatgaacacgtcataggctattttcataagttctcccaaacagtctcataagtgcttatg 42461368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 49940160 - 49940128
Alignment:
Q  36 tgttttcaaaagttctctcaaacagtctcacaa 68  Q
    |||||||| ||||||||||||||||||||||||    
T  49940160 tgttttcataagttctctcaaacagtctcacaa 49940128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 50681082 - 50681050
Alignment:
Q  36 tgttttcaaaagttctctcaaacagtctcacaa 68  Q
    |||||||| ||||||||||||||||||||||||    
T  50681082 tgttttcataagttctctcaaacagtctcacaa 50681050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 76
Target Start/End: Complemental strand, 50742862 - 50742790
Alignment:
Q  4 agttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttat 76  Q
    |||||||||||   |||| ||||||||  |  |||||||| ||||||||||||||||||| ||||| ||||||    
T  50742862 agttgaaaacagggtatgaacatgtcatgaactgttttcataagttctctcaaacagtctaacaagtgcttat 50742790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 55064901 - 55064937
Alignment:
Q  25 atgtcacaagttgttttcaaaagttctctcaaacagt 61  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  55064901 atgtcataagttgttttcaaaagttctcccaaacagt 55064937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 40)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 787373 - 787451
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatgcc 79  Q
    ||||| |||||||| ||||||||||||||| ||| |||||||| |||||||| |||||||| ||||||| |||||||||    
T  787373 ataagctgaaaacagcttatggacatgtcataagctgttttcataagttctcacaaacagtgtcacaagtgcttatgcc 787451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 28803544 - 28803473
Alignment:
Q  16 cttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatgccggtggata 87  Q
    ||||||||||||||| ||||||||| || | ||||||||||||||||||||| | |||||||||||| ||||    
T  28803544 cttatggacatgtcataagttgtttccatatgttctctcaaacagtctcacatgtgcttatgccggtagata 28803473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 44606133 - 44606078
Alignment:
Q  7 tgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtc 62  Q
    |||||||||||||||||||||||| |||||||||||| |||||||  |||||||||    
T  44606133 tgaaaacaacttatggacatgtcataagttgttttcataagttcttccaaacagtc 44606078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 13234547 - 13234625
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatgcc 79  Q
    |||||||||||||||||||||||||||||| ||  ||||||   |||  |||||||||||||| ||||| |||||||||    
T  13234547 ataagttgaaaacaacttatggacatgtcataatgtgtttttgtaagcactctcaaacagtcttacaagtgcttatgcc 13234625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 39621992 - 39622067
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttat 76  Q
    ||||| ||||||||| ||||| |  ||||| |||||||||||| ||||||||||||||||| || |||| ||||||    
T  39621992 ataagctgaaaacaatttatgaatttgtcataagttgttttcataagttctctcaaacagtgtcgcaagtgcttat 39622067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 69
Target Start/End: Complemental strand, 43199812 - 43199745
Alignment:
Q  2 taagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaag 69  Q
    |||| ||||||||||||||  |||||||||||||||| |||  || ||||| ||||||||||||||||    
T  43199812 taagctgaaaacaacttataaacatgtcacaagttgtattcgtaacttctcccaaacagtctcacaag 43199745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 1318296 - 1318354
Alignment:
Q  20 tggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatgc 78  Q
    ||||||||||| ||| |||||||| ||| |||| |||||||||||||||| ||||||||    
T  1318296 tggacatgtcataagatgttttcataagctctcacaaacagtctcacaagtgcttatgc 1318354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 11344797 - 11344731
Alignment:
Q  3 aagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaag 69  Q
    ||||||||||||  |||||||||||||| ||||||||| || ||| ||| ||||||||| |||||||    
T  11344797 aagttgaaaacagtttatggacatgtcataagttgtttccataaggtctgtcaaacagtttcacaag 11344731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 19977993 - 19978063
Alignment:
Q  6 ttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttat 76  Q
    |||||||||||||||| || ||| | |||||||||  | |||||||||||||||||||| |||| ||||||    
T  19977993 ttgaaaacaacttatgaacgtgttataagttgtttctataagttctctcaaacagtctcgcaagtgcttat 19978063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 5902572 - 5902500
Alignment:
Q  7 tgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatgcc 79  Q
    ||||||||  ||||| |||||||| ||| |||||||| |||||||  |||||||||||||||| | |||||||    
T  5902572 tgaaaacagtttatgaacatgtcataagctgttttcataagttcttccaaacagtctcacaagtgtttatgcc 5902500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 13220474 - 13220534
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagt 61  Q
    ||||||| |||||| |||||| ||| |||| |||||||||| | |||||||||||||||||    
T  13220474 ataagtttaaaacagcttatgaacaagtcataagttgtttttataagttctctcaaacagt 13220534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 16398494 - 16398442
Alignment:
Q  7 tgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaaca 59  Q
    |||| ||| ||||||||||||||| |||||||||||| | |||||||||||||    
T  16398494 tgaagacagcttatggacatgtcataagttgttttcatatgttctctcaaaca 16398442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 34652065 - 34651997
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaag 69  Q
    |||||||||||||| ||||||||||||||| |||||||||  | ||| | |||| ||| ||||||||||    
T  34652065 ataagttgaaaacagcttatggacatgtcataagttgtttctataagctttctccaaccgtctcacaag 34651997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 35485964 - 35486044
Alignment:
Q  7 tgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatgccggtggata 87  Q
    |||||||| |||||| |||| ||| |||||| |||   |||||||||||||||||||||||||  |||||| |||| ||||    
T  35485964 tgaaaacagcttatgaacatatcataagttgctttagtaagttctctcaaacagtctcacaagttcttatgtcggtagata 35486044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 41042051 - 41041983
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaag 69  Q
    |||||||||||||| || |||||||||| | |||||||||  | || |||||| |||||||||||||||    
T  41042051 ataagttgaaaacagctgatggacatgtaataagttgtttctataaattctctgaaacagtctcacaag 41041983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 43456736 - 43456668
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaag 69  Q
    ||||| ||||||||  ||||||||||||||  ||||||||||| ||| ||| ||||||||||| |||||    
T  43456736 ataagctgaaaacagtttatggacatgtcatgagttgttttcacaagctctttcaaacagtcttacaag 43456668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 69
Target Start/End: Original strand, 9478341 - 9478408
Alignment:
Q  2 taagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaag 69  Q
    |||| |||||||| ||||||||||||| | ||||||||| || ||  |||||||||||||| ||||||    
T  9478341 taagatgaaaacagcttatggacatgtaataagttgtttgcataaactctctcaaacagtcacacaag 9478408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 9878711 - 9878672
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttt 40  Q
    |||||| ||||||||||||||||||||||| |||||||||    
T  9878711 ataagtcgaaaacaacttatggacatgtcataagttgttt 9878672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 28677681 - 28677626
Alignment:
Q  8 gaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtct 63  Q
    |||||||||||||| | |||||| ||| |||||||| |||||||| ||||||||||    
T  28677681 gaaaacaacttatgaaaatgtcataagctgttttcataagttctcccaaacagtct 28677626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 30538202 - 30538163
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttt 40  Q
    ||||| |||||||||||||||||||||||| |||||||||    
T  30538202 ataagctgaaaacaacttatggacatgtcataagttgttt 30538163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 69
Target Start/End: Original strand, 40158760 - 40158827
Alignment:
Q  2 taagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaag 69  Q
    |||| ||||||||||||||  |||||||| ||| |||||||| |||||| | ||| ||||||||||||    
T  40158760 taagctgaaaacaacttataaacatgtcataagctgttttcataagttcccccaatcagtctcacaag 40158827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 41032984 - 41032917
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaa 68  Q
    ||||| |||||||||||||| ||||||  | |||||||||  | ||||||||||||||||| ||||||    
T  41032984 ataagctgaaaacaacttatagacatggaagaagttgtttctataagttctctcaaacagtatcacaa 41032917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 43065479 - 43065428
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctc 52  Q
    ||||| ||||||||| |||||||||||||| |||||||||||| ||| ||||    
T  43065479 ataagctgaaaacaatttatggacatgtcataagttgttttcataagctctc 43065428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 1939361 - 1939323
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgtt 39  Q
    |||||||||||||| ||||||||||||||| ||||||||    
T  1939361 ataagttgaaaacagcttatggacatgtcataagttgtt 1939323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 7283037 - 7283083
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaag 47  Q
    ||||| |||||||||||||||||||| ||| ||||||||| ||||||    
T  7283037 ataagatgaaaacaacttatggacatatcataagttgtttccaaaag 7283083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 10285901 - 10285943
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttca 43  Q
    |||||||||||||| ||||||||||||||| ||||| ||||||    
T  10285901 ataagttgaaaacagcttatggacatgtcataagttattttca 10285943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 11863967 - 11864009
Alignment:
Q  25 atgtcacaagttgttttcaaaagttctctcaaacagtctcaca 67  Q
    |||||| |||||||||||||| |||||| ||||||||||||||    
T  11863967 atgtcataagttgttttcaaatgttctcccaaacagtctcaca 11864009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 32106828 - 32106754
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgctta 75  Q
    |||| ||||||||| ||||  || |||||| ||| |||||||| |||||||| |||||||||||| ||| |||||    
T  32106828 ataatttgaaaacagcttacagatatgtcataagctgttttcataagttctcacaaacagtctcataagagctta 32106754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 32837382 - 32837432
Alignment:
Q  19 atggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaag 69  Q
    |||||||||| | ||| |||||||| |||||||| ||||||||||||||||    
T  32837382 atggacatgttataagctgttttcataagttctcccaaacagtctcacaag 32837432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 38077096 - 38077034
Alignment:
Q  7 tgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaag 69  Q
    |||||||  |||||||| |||||  |||||||||| | ||||||||||||||| |||||||||    
T  38077096 tgaaaacctcttatggaaatgtcgtaagttgttttaagaagttctctcaaacaatctcacaag 38077034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 41809266 - 41809196
Alignment:
Q  9 aaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatgcc 79  Q
    ||||||||||||| |||||||| ||||||||| || ||| |||  ||| |||||||||||| | |||||||    
T  41809266 aaaacaacttatgaacatgtcataagttgtttccacaagctcttacaatcagtctcacaagtgtttatgcc 41809196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 12140573 - 12140630
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaac 58  Q
    |||||||||| ||||||| |  | |||||| |||||||||||| ||||||||||||||    
T  12140573 ataagttgaagacaacttgtaaaaatgtcataagttgttttcataagttctctcaaac 12140630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 13866942 - 13866987
Alignment:
Q  24 catgtcacaagttgttttcaaaagttctctcaaacagtctcacaag 69  Q
    ||||||| | |||||||||  |||||||||||||||||||||||||    
T  13866942 catgtcataggttgttttcttaagttctctcaaacagtctcacaag 13866987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 65
Target Start/End: Original strand, 27317452 - 27317485
Alignment:
Q  32 aagttgttttcaaaagttctctcaaacagtctca 65  Q
    |||||||||||| |||||||||||||||||||||    
T  27317452 aagttgttttcataagttctctcaaacagtctca 27317485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 65
Target Start/End: Original strand, 31744375 - 31744404
Alignment:
Q  36 tgttttcaaaagttctctcaaacagtctca 65  Q
    ||||||||||||||||||||||||||||||    
T  31744375 tgttttcaaaagttctctcaaacagtctca 31744404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 1494459 - 1494415
Alignment:
Q  17 ttatggacatgtcacaagttgttttcaaaagttctctcaaacagt 61  Q
    |||||||||||||| ||| |||||||| ||| |||||||||||||    
T  1494459 ttatggacatgtcataagctgttttcataagctctctcaaacagt 1494415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 4350747 - 4350807
Alignment:
Q  17 ttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatg 77  Q
    ||||| |||||||| ||| |||||||| ||||||||||||||| ||||  ||| |||||||    
T  4350747 ttatgaacatgtcataagctgttttcataagttctctcaaacaatctcttaagtgcttatg 4350807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 7928328 - 7928260
Alignment:
Q  1 ataagttgaaaacaacttatggaca-tgtc-acaagttgttttcaaaagttctctcaaacagtctcaca 67  Q
    ||||| ||||||||||||||| ||| |||| | ||| |||||||||||||||| || ||||||||||||    
T  7928328 ataagctgaaaacaacttatgaacaatgtccataagctgttttcaaaagttctttctaacagtctcaca 7928260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 78
Target Start/End: Complemental strand, 32633598 - 32633526
Alignment:
Q  6 ttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatgc 78  Q
    ||||||||||| |||| |||||||| |||| ||||||  ||||| ||||||||  | ||||||| ||||||||    
T  32633598 ttgaaaacaacatatgaacatgtcataagtagttttcttaagttatctcaaactatatcacaagtgcttatgc 32633526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 40682424 - 40682356
Alignment:
Q  1 ataagttgaaaacaacttatggac-atgtcacaagttgttttcaaaagttctctcaaacagtctcacaa 68  Q
    ||||||||||||||||||||| || |||||| ||| | |||| | |||||||| |||||| ||||||||    
T  40682424 ataagttgaaaacaacttatgaacaatgtcataagctattttaacaagttctcccaaacaatctcacaa 40682356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 37)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 8629499 - 8629564
Alignment:
Q  3 aagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaa 68  Q
    |||||||||||||||||||  ||||||| |||||||||||| |||||||||||||| |||||||||    
T  8629499 aagttgaaaacaacttatgatcatgtcataagttgttttcataagttctctcaaacggtctcacaa 8629564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 30918154 - 30918220
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaa 68  Q
    ||||| ||||||||||||||| | ||||||||||||||||||| ||| ||||||||||||||||||||    
T  30918154 ataagctgaaaacaacttatgaa-atgtcacaagttgttttcataagctctctcaaacagtctcacaa 30918220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 16162812 - 16162912
Alignment:
Q  12 acaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatgccggtggatagataaattcaaataaaccaatcca 111  Q
    |||||||||| ||| |||| ||| |||||||| ||||| ||||||||||||||||||| | ||||||  |    |||||||| |||||||| ||||||||    
T  16162812 acaacttatgaacaggtcataagctgttttcataagttttctcaaacagtctcacaagtgtttatgctag----tagataaactcaaataagccaatcca 16162907  T
Q  112 aacag 116  Q
    |||||    
T  16162908 aacag 16162912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 11569486 - 11569408
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatgcc 79  Q
    ||||| ||||||||||||||| |||||||| ||| ||||| || ||| ||||| ||||||||||||||| | |||||||    
T  11569486 ataagctgaaaacaacttatgtacatgtcataagctgtttccataagctctcttaaacagtctcacaagtggttatgcc 11569408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 9700042 - 9700119
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatgc 78  Q
    ||||| |||||||| ||||||||||||||| || ||| ||||| ||| ||||||||| ||||||||||| | ||||||    
T  9700042 ataaggtgaaaacagcttatggacatgtcataaattgatttcacaagctctctcaaatagtctcacaagtgtttatgc 9700119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 9572919 - 9572975
Alignment:
Q  9 aaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctca 65  Q
    |||||||||||||||||||||| ||||| |||||  |||||||| ||||||||||||    
T  9572919 aaaacaacttatggacatgtcataagttattttcgtaagttctcacaaacagtctca 9572975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 32841015 - 32840951
Alignment:
Q  1 ataagttgaaaacaacttatggaca-tgtcacaagttgttttcaaaagttctctcaaacagtctc 64  Q
    ||||| ||||||||||||||| ||| ||||| |||||||||||| |||||||| |||||||||||    
T  32841015 ataagctgaaaacaacttatgaacaatgtcataagttgttttcataagttctcccaaacagtctc 32840951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 779090 - 779027
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctc 64  Q
    ||||| ||||||||||||||| |||||||| |||||||||||  ||||||| ||||||| ||||    
T  779090 ataagatgaaaacaacttatgaacatgtcataagttgttttcgtaagttctttcaaacaatctc 779027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 115
Target Start/End: Complemental strand, 2488015 - 2487927
Alignment:
Q  23 acatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatgccggtggatagataaattcaaataaaccaatccaaaca 115  Q
    |||||| | |||||||||||| |||||||| |||||||||||||||| ||||||| | |    ||||| || |||||||| ||||||||||||    
T  2488015 acatgttataagttgttttcataagttctcccaaacagtctcacaagtgcttatgtcag----tagatgaactcaaataagccaatccaaaca 2487927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 11771040 - 11770973
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaa 68  Q
    |||||||||||||||| ||| ||||| ||| |||||||||||| ||||||| | ||||||||| ||||    
T  11771040 ataagttgaaaacaacgtatagacatatcataagttgttttcataagttcttttaaacagtctaacaa 11770973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 14949907 - 14949974
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaa 68  Q
    ||||| |||||||| ||||||||||||||| ||||| |||||| ||| ||||  ||||||||||||||    
T  14949907 ataagctgaaaacagcttatggacatgtcataagttattttcataagctctcctaaacagtctcacaa 14949974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 2091804 - 2091882
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatgcc 79  Q
    ||||||||||||||||||||||| || ||| ||||||||||    || ||||||||||| ||||||||| | |||||||    
T  2091804 ataagttgaaaacaacttatggatatatcataagttgtttttgtgagctctctcaaacaatctcacaagtgtttatgcc 2091882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 41442481 - 41442416
Alignment:
Q  2 taagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcaca 67  Q
    |||| |||||||| | |||| |||||||| || ||||||||| ||||||| |||||||||||||||    
T  41442481 taagctgaaaacagcatatgaacatgtcataaattgttttcataagttctgtcaaacagtctcaca 41442416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 6526250 - 6526194
Alignment:
Q  32 aagttgttttcaaaagttctctcaaacagtctcacaagcgcttatgccggtggatag 88  Q
    |||||||||||  ||||||||||||||| ||||||||| ||||||||| || |||||    
T  6526250 aagttgttttcctaagttctctcaaacaatctcacaagggcttatgccagtagatag 6526194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 8255433 - 8255489
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaa 57  Q
    ||||| ||||||||||||||| ||||||||  |||||||| || |||||||||||||    
T  8255433 ataaggtgaaaacaacttatgcacatgtcattagttgtttccataagttctctcaaa 8255489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 27119958 - 27119890
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaag 69  Q
    ||||| |||||||||||||| |||||||||  ||| ||||||| ||||| |  ||||||||||||||||    
T  27119958 ataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaag 27119890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 30988005 - 30987953
Alignment:
Q  16 cttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaa 68  Q
    ||||||||||||||| ||||||||| || ||| |||||||||||| |||||||    
T  30988005 cttatggacatgtcataagttgtttccataagctctctcaaacagactcacaa 30987953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 6950363 - 6950430
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaa 68  Q
    ||||| |||||||||||||| ||||||||| | ||||||| || ||| |||| |||||| ||||||||    
T  6950363 ataagctgaaaacaacttatcgacatgtcataggttgtttacataagctctcccaaacaatctcacaa 6950430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 7853435 - 7853498
Alignment:
Q  16 cttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatgcc 79  Q
    |||||||| ||||||  ||||||||||| |||||||| |||| |||||||| || |||||||||    
T  7853435 cttatggatatgtcattagttgttttcacaagttctcccaaatagtctcactagtgcttatgcc 7853498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 7918475 - 7918412
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctc 64  Q
    |||||||| ||||| |||||| |||||||  |||||||||||| ||| |||| |||||||||||    
T  7918475 ataagttggaaacagcttatgaacatgtcttaagttgttttcataagctctcccaaacagtctc 7918412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 28769368 - 28769281
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatgccggtggatag 88  Q
    ||||| |||||||||||||||||||| ||| | | | ||| || ||| ||||||||| | ||||||||| ||||||||| || |||||    
T  28769368 ataagctgaaaacaacttatggacatatcatatgctatttacacaagctctctcaaataatctcacaagtgcttatgccagtagatag 28769281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 34770927 - 34770986
Alignment:
Q  19 atggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatgc 78  Q
    |||||||||||| ||| |||||||| | | ||||||||||||| ||||||| ||||||||    
T  34770927 atggacatgtcataagctgttttcataggatctctcaaacagtttcacaagtgcttatgc 34770986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 39551238 - 39551171
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaa 68  Q
    ||||||| |||||| ||| ||||||||||| ||||||||| || || ||||| |||||||| ||||||    
T  39551238 ataagttaaaaacagcttttggacatgtcataagttgtttccataaattctcccaaacagtttcacaa 39551171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 778431 - 778505
Alignment:
Q  2 taagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttat 76  Q
    ||||||||||||||||||   || ||||  | |||||||||| |||||||  |||||||||||||||| ||||||    
T  778431 taagttgaaaacaacttacaaacgtgtcttatgttgttttcataagttcttgcaaacagtctcacaagtgcttat 778505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 87
Target Start/End: Original strand, 2482936 - 2482990
Alignment:
Q  33 agttgttttcaaaagttctctcaaacagtctcacaagcgcttatgccggtggata 87  Q
    ||||||||||  |||||||| |||||||||||||||| ||||||| | |||||||    
T  2482936 agttgttttcttaagttctcccaaacagtctcacaagggcttatgtctgtggata 2482990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 8558719 - 8558769
Alignment:
Q  19 atggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaag 69  Q
    |||||||||||||||||||||| || ||| |||| ||||||| ||||||||    
T  8558719 atggacatgtcacaagttgtttccataagctctcccaaacagcctcacaag 8558769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 11185262 - 11185328
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcaca 67  Q
    ||||||||||||||||||||| |||||| | ||| ||||| |||||| ||||  ||||||| |||||    
T  11185262 ataagttgaaaacaacttatgaacatgttataagatgtttccaaaagatctcataaacagtttcaca 11185328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 13000453 - 13000375
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatgcc 79  Q
    ||||| |||||||||||| ||||||||||| ||||||||  || ||  |||  |||| ||||||||||| |||||||||    
T  13000453 ataagctgaaaacaacttgtggacatgtcataagttgttaccataaactcttgcaaatagtctcacaagtgcttatgcc 13000375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 68
Target Start/End: Complemental strand, 35534616 - 35534574
Alignment:
Q  26 tgtcacaagttgttttcaaaagttctctcaaacagtctcacaa 68  Q
    ||||| ||| |||||||| ||||||||||||||||||||||||    
T  35534616 tgtcataagctgttttcacaagttctctcaaacagtctcacaa 35534574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 3600767 - 3600738
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtca 30  Q
    ||||||||||||||||||||||||||||||    
T  3600767 ataagttgaaaacaacttatggacatgtca 3600738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 14339634 - 14339605
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtca 30  Q
    ||||||||||||||||||||||||||||||    
T  14339634 ataagttgaaaacaacttatggacatgtca 14339605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 31875624 - 31875559
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcac 66  Q
    ||||||||||||   ||||||||||||||| ||||||||| || ||| | ||||||||||| ||||    
T  31875624 ataagttgaaaatggcttatggacatgtcataagttgtttccataagctttctcaaacagtgtcac 31875559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 39049315 - 39049380
Alignment:
Q  3 aagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaa 68  Q
    |||||||||||| ||||| ||||||| | |||||||||||| ||| | || |||||| ||||||||    
T  39049315 aagttgaaaacagcttattgacatgttataagttgttttcataagctttcacaaacaatctcacaa 39049380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 40253167 - 40253224
Alignment:
Q  19 atggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttat 76  Q
    |||||||||||||||||||||| || |||||||  ||||  |||||||||| ||||||    
T  40253167 atggacatgtcacaagttgtttccataagttcttgcaaatggtctcacaagtgcttat 40253224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 2595026 - 2594986
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgtttt 41  Q
    ||||| ||||||||||||||| |||||||| ||||||||||    
T  2595026 ataagctgaaaacaacttatgaacatgtcataagttgtttt 2594986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 11376744 - 11376812
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaag 69  Q
    ||||| |||||||||  |||  |||||||||||| | |||||| |||||||| |||| |||||||||||    
T  11376744 ataagctgaaaacaagatattaacatgtcacaagctattttcataagttctcccaaatagtctcacaag 11376812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 79
Target Start/End: Original strand, 12833447 - 12833479
Alignment:
Q  47 gttctctcaaacagtctcacaagcgcttatgcc 79  Q
    ||||||||||||||||||||||| |||||||||    
T  12833447 gttctctcaaacagtctcacaagtgcttatgcc 12833479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 35)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 2460180 - 2460103
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatgc 78  Q
    |||||||||||||||||||  ||||||||| ||||||||| || ||| |||||||||||||||||||||  |||||||    
T  2460180 ataagttgaaaacaacttaaagacatgtcataagttgtttccataagctctctcaaacagtctcacaagtacttatgc 2460103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 3738110 - 3738187
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatgc 78  Q
    ||||||||||| || ||||||||||||||| ||| ||||| || ||| ||| ||||||||||||||||| ||||||||    
T  3738110 ataagttgaaagcagcttatggacatgtcataagctgtttccacaagatctttcaaacagtctcacaagggcttatgc 3738187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 4080957 - 4081033
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatg 77  Q
    ||||||||||||||||||||| ||||| || |||||||||||| ||  ||||||||| |||  ||||||| ||||||    
T  4080957 ataagttgaaaacaacttatgaacatggcataagttgttttcataaaatctctcaaatagtgccacaagcacttatg 4081033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 10031773 - 10031849
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatg 77  Q
    ||||| ||||||||||||||||| |||||  |||||| ||||| | | ||| ||||||||||||||||| |||||||    
T  10031773 ataagatgaaaacaacttatggatatgtcgtaagttggtttcataggctctttcaaacagtctcacaagtgcttatg 10031849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 69
Target Start/End: Original strand, 769180 - 769247
Alignment:
Q  2 taagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaag 69  Q
    ||||||||||||| |||||| |||||||| ||| |||||||| ||||||   ||||||||||||||||    
T  769180 taagttgaaaacagcttatgaacatgtcataagatgttttcataagttcatccaaacagtctcacaag 769247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 115
Target Start/End: Complemental strand, 27595591 - 27595483
Alignment:
Q  6 ttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatgccggtggatagataaattcaaataaacc 105  Q
    ||||||| | |||||| |||||||| ||||||||| || || ||||| |||||||||||| ||| ||||||||  || |||| ||||  |||||||| ||    
T  27595591 ttgaaaatagcttatgaacatgtcataagttgtttccataaattctcccaaacagtctcataagtgcttatgcaagttgata-ataagctcaaataaccc 27595493  T
Q  106 aatccaaaca 115  Q
    |||| |||||    
T  27595492 aatctaaaca 27595483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 115
Target Start/End: Complemental strand, 27693463 - 27693355
Alignment:
Q  6 ttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatgccggtggatagataaattcaaataaacc 105  Q
    ||||||| | |||||| |||||||| ||||||||| || || |||||||||| |||||||||||  |||||||  || |||| |||   |||||||| ||    
T  27693463 ttgaaaatagcttatgaacatgtcataagttgtttccataaattctctcaaatagtctcacaagtacttatgcgagttgata-ataggctcaaataaccc 27693365  T
Q  106 aatccaaaca 115  Q
    ||||||||||    
T  27693364 aatccaaaca 27693355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 30863288 - 30863365
Alignment:
Q  2 taagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatgcc 79  Q
    |||| ||||||||||||||| |||||||| |||||||||||| ||| |||  |||| ||||| ||||| | |||||||    
T  30863288 taagctgaaaacaacttatgtacatgtcataagttgttttcataagctctaccaaagagtctaacaagtgtttatgcc 30863365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 32917253 - 32917306
Alignment:
Q  16 cttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaag 69  Q
    ||||||||||||||| ||||||||| || ||| |||| ||||||||||||||||    
T  32917253 cttatggacatgtcataagttgtttccataagctctcccaaacagtctcacaag 32917306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 33500501 - 33500444
Alignment:
Q  9 aaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcac 66  Q
    ||||||||||||| |||||||| || ||||||||| ||| || |||||||||||||||    
T  33500501 aaaacaacttatgcacatgtcataaattgttttcataagctccctcaaacagtctcac 33500444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 281877 - 281809
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaag 69  Q
    ||||| |||||||||||||| ||||||||| |||||| || ||  || |||| ||||||||||||||||    
T  281877 ataagctgaaaacaacttatagacatgtcataagttgcttccattagctctcccaaacagtctcacaag 281809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 4246451 - 4246507
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaa 57  Q
    |||||||||||||| |||||||||||||||  |||||||| |||||| || ||||||    
T  4246451 ataagttgaaaacagcttatggacatgtcatgagttgtttccaaaagctcactcaaa 4246507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 8035177 - 8035109
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaag 69  Q
    ||||||||||||||| |||||  ||||||| |||||||||||  |||||||| |||| |||||| ||||    
T  8035177 ataagttgaaaacaagttatgaccatgtcataagttgttttcttaagttctcccaaatagtctctcaag 8035109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 32171412 - 32171336
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatg 77  Q
    ||||| |||||| | ||| ||||| ||||| ||| |||||||| ||| |||||||||||||||| |||| |||||||    
T  32171412 ataagctgaaaatagcttctggacttgtcataagctgttttcataagctctctcaaacagtctcgcaagtgcttatg 32171336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 33116641 - 33116693
Alignment:
Q  17 ttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaag 69  Q
    ||||| |||||||| |||||||||||| || ||| ||||||||||||||||||    
T  33116641 ttatgcacatgtcataagttgttttcataaattccctcaaacagtctcacaag 33116693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 33832294 - 33832238
Alignment:
Q  9 aaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctca 65  Q
    ||||||||||||  |||||||| |||||||||||| ||||||||| |||||| ||||    
T  33832294 aaaacaacttataaacatgtcataagttgttttcataagttctcttaaacagactca 33832238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 33887871 - 33887939
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaag 69  Q
    |||||||||||||||||| || |||||||| ||| | |||||| || |||||||||||| | |||||||    
T  33887871 ataagttgaaaacaacttgtgaacatgtcataagctattttcataaattctctcaaacaatgtcacaag 33887939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 9027619 - 9027678
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacag 60  Q
    ||||| |||||||||||||||||||||||| ||||| ||| || ||| ||| ||||||||    
T  9027619 ataagctgaaaacaacttatggacatgtcataagttatttccataagctctttcaaacag 9027678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 9668014 - 9667975
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttt 40  Q
    |||||||||||||| ||||||||||||||| |||||||||    
T  9668014 ataagttgaaaacagcttatggacatgtcataagttgttt 9667975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 20368209 - 20368142
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaa 68  Q
    |||||||||||  | |||||| |||||||| |||||||||||| |||||||| |||| ||||| ||||    
T  20368209 ataagttgaaactagcttatgaacatgtcataagttgttttcataagttctcccaaatagtcttacaa 20368142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 1575936 - 1575986
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttct 51  Q
    ||||||| |||||| |||||| |||||||| |||||||||||| |||||||    
T  1575936 ataagttaaaaacagcttatgaacatgtcataagttgttttcataagttct 1575986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 2263235 - 2263293
Alignment:
Q  3 aagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagt 61  Q
    ||||||||||||   |||| |||||||| | |||||||||| |||||||||||||||||    
T  2263235 aagttgaaaacacgctatgaacatgtcatatgttgttttcataagttctctcaaacagt 2263293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 5566206 - 5566164
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttca 43  Q
    |||||||||||||||||||||||||||| | ||| ||||||||    
T  5566206 ataagttgaaaacaacttatggacatgtaataagctgttttca 5566164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 31624131 - 31624181
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttct 51  Q
    |||||||||||||| |||||| |||||||| ||| |||||||| |||||||    
T  31624131 ataagttgaaaacagcttatgaacatgtcataagctgttttcataagttct 31624181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 32578015 - 32577957
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaaca 59  Q
    ||||| |||||||| || | |||||||||| |||||||||||| ||| |||||||||||    
T  32578015 ataagctgaaaacagctcaaggacatgtcataagttgttttcataagctctctcaaaca 32577957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 34939554 - 34939612
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaaca 59  Q
    ||||| ||||||||||||| |||| ||||| ||||||||| || ||| |||||||||||    
T  34939554 ataagctgaaaacaacttacggacgtgtcataagttgtttccataagctctctcaaaca 34939612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 26559259 - 26559190
Alignment:
Q  10 aaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatgcc 79  Q
    ||||| ||| || |||| ||| |||||||||||| |||||||  |||||||||||||||  |||||||||    
T  26559259 aaacagcttgtgaacatatcataagttgttttcataagttcttccaaacagtctcacaaatgcttatgcc 26559190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 27857414 - 27857467
Alignment:
Q  16 cttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaag 69  Q
    |||||||| |||||| |||||||||||| ||| |||| |||||||| |||||||    
T  27857414 cttatggagatgtcataagttgttttcataagctctcccaaacagtttcacaag 27857467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 31583720 - 31583749
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtca 30  Q
    ||||||||||||||||||||||||||||||    
T  31583720 ataagttgaaaacaacttatggacatgtca 31583749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 33737618 - 33737671
Alignment:
Q  8 gaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagt 61  Q
    ||||||| |||||| ||||| || ||||||| |||| |||||||||||||||||    
T  33737618 gaaaacagcttatgaacatgccataagttgtgttcataagttctctcaaacagt 33737671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 34403896 - 34403973
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatgc 78  Q
    ||||| |||||||| |||||| |||||||| |||||||||||  || |||||  ||||||||| ||||| | ||||||    
T  34403896 ataaggtgaaaacaccttatgaacatgtcataagttgttttcttaacttctcctaaacagtctaacaagtgtttatgc 34403973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 2160966 - 2160938
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtc 29  Q
    |||||||||||||||||||||||||||||    
T  2160966 ataagttgaaaacaacttatggacatgtc 2160938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 3528844 - 3528884
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgtttt 41  Q
    ||||| ||||||||| |||||||||||||| ||||||||||    
T  3528844 ataagatgaaaacaagttatggacatgtcataagttgtttt 3528884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 8348275 - 8348327
Alignment:
Q  9 aaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagt 61  Q
    |||||||||||||| ||||| | |||||||||||  ||| |||||||||||||    
T  8348275 aaaacaacttatggtcatgttataagttgttttcgtaagctctctcaaacagt 8348327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 20377942 - 20377898
Alignment:
Q  8 gaaaacaacttatggacatgtcacaagttgttttcaaaagttctc 52  Q
    ||||||||||||| ||||||||| |||||||||||| ||| ||||    
T  20377942 gaaaacaacttatagacatgtcataagttgttttcataagctctc 20377898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 25670615 - 25670539
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatg 77  Q
    ||||| ||||||||| ||||  |||||||| |||||||||||| ||||| ||||||||||||||||||| |||||||    
T  25670615 ataagctgaaaacaatttattaacatgtcataagttgttttcataagttttctcaaacagtctcacaagagcttatg 25670539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 33894668 - 33894744
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatg 77  Q
    ||||| |||||||||||||||||||||||| | | |||||||| ||| |||| |||||||||||||||| |||||||    
T  33894668 ataagctgaaaacaacttatggacatgtcatatgctgttttcataagctctcacaaacagtctcacaagtgcttatg 33894744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 36537957 - 36538028
Alignment:
Q  9 aaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatgccg 80  Q
    ||||||||||||| |||||||| ||||||||| || ||||||||||||||| ||||||||| | ||||||||    
T  36537957 aaaacaacttatgaacatgtcataagttgtttccataagttctctcaaacaatctcacaagtgtttatgccg 36538028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 28076600 - 28076673
Alignment:
Q  6 ttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatgcc 79  Q
    |||||||||||||||||||||||||  |||||||| |  || ||||||||||||| ||||||||  ||||||||    
T  28076600 ttgaaaacaacttatggacatgtcattagttgtttccgtaaattctctcaaacaggctcacaagttcttatgcc 28076673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 28340434 - 28340372
Alignment:
Q  16 cttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatgcc 79  Q
    ||||||||||||||| |||||||||||| ||| |||| | |||||||||||||| |||||||||    
T  28340434 cttatggacatgtcataagttgttttcataagctctc-ccaacagtctcacaagagcttatgcc 28340372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 23214911 - 23214973
Alignment:
Q  16 cttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatgc 78  Q
    |||||||| |||||| |||||||||||| || |||||||||||||||||| ||| | ||||||    
T  23214911 cttatggaaatgtcataagttgttttcataaattctctcaaacagtctcataagtgtttatgc 23214973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 28844537 - 28844607
Alignment:
Q  7 tgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatg 77  Q
    ||||||||||| |||||||||||| |||||||||||| ||| ||||  ||||||| ||||| | |||||||    
T  28844537 tgaaaacaactgatggacatgtcataagttgttttcagaagctctcctaaacagtatcacatgtgcttatg 28844607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 44808199 - 44808276
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatgc 78  Q
    ||||| ||||||||  |||||||||||||| ||||| |||||| ||| ||| ||||||||||| ||||  ||||||||    
T  44808199 ataagctgaaaacaggttatggacatgtcataagttattttcataaggtctatcaaacagtctgacaactgcttatgc 44808276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 36598385 - 36598309
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatg 77  Q
    ||||| |||||||| |||||| |||||||| ||| ||||| || ||| ||||||||||| ||||||||  |||||||    
T  36598385 ataagctgaaaacagcttatgaacatgtcataagatgtttccataagctctctcaaacaatctcacaattgcttatg 36598309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 46082077 - 46082141
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctca 65  Q
    ||||| |||||||||||||||| ||||||| |||||||||||| ||| ||||   ||||||||||    
T  46082077 ataagctgaaaacaacttatggtcatgtcataagttgttttcataagctctcattaacagtctca 46082141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 46223101 - 46223021
Alignment:
Q  2 taagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatgccggt 82  Q
    |||| |||||||| |||||||||||||| |||| ||||| || ||  |  |||||||||||||||||| | ||||||||||    
T  46223101 taagctgaaaacagcttatggacatgtcgcaagctgtttccataaaatgcctcaaacagtctcacaagtgtttatgccggt 46223021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 48157149 - 48157082
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaa 68  Q
    ||||| |||||||| |||||||||||| || |||||||||  | ||| |||| |||||||||||||||    
T  48157149 ataagctgaaaacagcttatggacatggcataagttgtttctataagctctcccaaacagtctcacaa 48157082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 6857368 - 6857310
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaaca 59  Q
    ||||||||||||||||||||||||||| || ||| ||||| || ||| |||||| ||||    
T  6857368 ataagttgaaaacaacttatggacatggcataagctgtttccataagctctctcgaaca 6857310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 8341874 - 8341908
Alignment:
Q  6 ttgaaaacaacttatggacatgtcacaagttgttt 40  Q
    ||||||||||||||||||||||||| |||||||||    
T  8341874 ttgaaaacaacttatggacatgtcataagttgttt 8341908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 15740440 - 15740390
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttct 51  Q
    ||||||| |||||| |||||| |||||||| |||||||||||| |||||||    
T  15740440 ataagttaaaaacagcttatgaacatgtcataagttgttttcataagttct 15740390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 69
Target Start/End: Complemental strand, 4970789 - 4970752
Alignment:
Q  32 aagttgttttcaaaagttctctcaaacagtctcacaag 69  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  4970789 aagttgttttcataagttctcccaaacagtctcacaag 4970752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 22551434 - 22551373
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtc 62  Q
    ||||| |||||||||| | || |||||||| ||| |||||||||||  ||||||||||||||    
T  22551434 ataagctgaaaacaacatttgaacatgtcataagctgttttcaaaatctctctcaaacagtc 22551373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 27508346 - 27508293
Alignment:
Q  16 cttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaag 69  Q
    ||||||||||||| | |||| |||| || || ||||||||||||||||||||||    
T  27508346 cttatggacatgttataagtggtttccataaattctctcaaacagtctcacaag 27508293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 30496746 - 30496823
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatgc 78  Q
    ||||| ||||||||||||| || |||| || ||| |||||||| ||| ||||||||  |||||| |||| ||||||||    
T  30496746 ataagctgaaaacaacttacgggcatgccataagctgttttcataagctctctcaagtagtctcgcaagggcttatgc 30496823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 33645982 - 33645921
Alignment:
Q  9 aaaacaacttatggacatgtcacaagttgttttcaaaagttctct-caaacagtctcacaag 69  Q
    |||||||||||| ||||||||| ||||||||| || ||| ||||| ||| ||||||||||||    
T  33645982 aaaacaacttatagacatgtcataagttgtttccataagctctctccaaccagtctcacaag 33645921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 39360064 - 39360129
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcac 66  Q
    ||||| ||||| ||||||||||| |||||| ||||||||| || ||  ||| ||||||||||||||    
T  39360064 ataagctgaaagcaacttatggatatgtcataagttgtttccataaactctatcaaacagtctcac 39360129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 3468655 - 3468719
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctca 65  Q
    |||||||| |||||||||||||||||||||  |||||||| ||| |  ||||  |||||||||||    
T  3468655 ataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctca 3468719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 12242285 - 12242353
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaag 69  Q
    ||||| |||||||||||||| | ||| ||| |||  |||| || ||| |||||||||||||||||||||    
T  12242285 ataagctgaaaacaacttataggcatatcataagccgtttgcataagctctctcaaacagtctcacaag 12242353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 19022614 - 19022546
Alignment:
Q  1 ataagttgaaaacaacttatggacat-gtcacaagttgttttcaaaagttctctcaaacagtctcacaa 68  Q
    |||||||||| |||||||||| | || |||| |||||||||||| || ||||| |||||| ||||||||    
T  19022614 ataagttgaagacaacttatgaaaattgtcataagttgttttcataaattctcccaaacaatctcacaa 19022546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 19719047 - 19719099
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctct 53  Q
    ||||| ||||||||  ||||| |||||||| |||||||||||| |||||||||    
T  19719047 ataagctgaaaacagtttatgaacatgtcataagttgttttcataagttctct 19719099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 20526523 - 20526555
Alignment:
Q  36 tgttttcaaaagttctctcaaacagtctcacaa 68  Q
    |||||||| ||||||||||||||||||||||||    
T  20526523 tgttttcataagttctctcaaacagtctcacaa 20526555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 27626152 - 27626084
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaag 69  Q
    ||||||| ||||||  |||||||||||||| ||| ||||| || ||| | ||||||||| |||||||||    
T  27626152 ataagtttaaaacagtttatggacatgtcataagctgtttccataagctttctcaaacaatctcacaag 27626084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 29574638 - 29574586
Alignment:
Q  17 ttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaag 69  Q
    |||||||||||||| ||| ||||| || ||||||||  |||||||||||||||    
T  29574638 ttatggacatgtcataagctgtttccataagttctccgaaacagtctcacaag 29574586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 67
Target Start/End: Complemental strand, 30749029 - 30748997
Alignment:
Q  35 ttgttttcaaaagttctctcaaacagtctcaca 67  Q
    ||||||||| |||||||||||||||||||||||    
T  30749029 ttgttttcataagttctctcaaacagtctcaca 30748997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 34035958 - 34036026
Alignment:
Q  1 ataagttgaaaacaacttatggac-atgtcacaagttgttttcaaaagttctctcaaacagtctcacaa 68  Q
    ||||||||||||||||||||| || |||||| ||||| |||||| |||||||  |||  ||||||||||    
T  34035958 ataagttgaaaacaacttatgaacaatgtcataagttattttcataagttcttccaagtagtctcacaa 34036026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 34754839 - 34754775
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctca 65  Q
    ||||| |||||||||||||| | | ||||| ||| |||||||  ||| |||||||||||||||||    
T  34754839 ataagctgaaaacaacttataggcttgtcataagatgttttcttaagctctctcaaacagtctca 34754775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 47134786 - 47134746
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgtttt 41  Q
    ||||| |||||||||||||||||| ||||| ||||||||||    
T  47134786 ataagctgaaaacaacttatggacgtgtcataagttgtttt 47134746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 37611238 - 37611176
Alignment:
Q  7 tgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaag 69  Q
    |||||||| |||||| ||||||||||||||||||||| ||| ||||||||||| |||||||||    
T  37611238 tgaaaacagcttatgaacatgtcacaagttgttttcataagctctctcaaacaatctcacaag 37611176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 37787968 - 37787906
Alignment:
Q  7 tgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaag 69  Q
    |||||||| |||||| ||||||||||||||||||||| ||| ||||||||||| |||||||||    
T  37787968 tgaaaacagcttatgaacatgtcacaagttgttttcataagctctctcaaacaatctcacaag 37787906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 12460022 - 12459954
Alignment:
Q  9 aaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatg 77  Q
    |||||||| |||| |||||||| |||||||||||| | |||||| |||||||||||||| | |||||||    
T  12460022 aaaacaacatatgaacatgtcataagttgttttcataggttctcccaaacagtctcacaggtgcttatg 12459954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 4273406 - 4273339
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaa 68  Q
    |||||||||||||||||||| |||| |||| ||| ||||| || | ||||||||||||| ||||||||    
T  4273406 ataagttgaaaacaacttatagacaagtcataagctgtttccataggttctctcaaacaatctcacaa 4273339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 13604878 - 13604825
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctc 54  Q
    |||||||||||||||| ||||||||||||| ||| |||||||| ||| ||||||    
T  13604878 ataagttgaaaacaacgtatggacatgtcataagctgttttcataagctctctc 13604825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 16457642 - 16457574
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaag 69  Q
    ||||| ||||||||||||||| ||||||||||| |||||| || | | |||  ||||||||||||||||    
T  16457642 ataagctgaaaacaacttatgaacatgtcacaatttgtttccatatgctcttccaaacagtctcacaag 16457574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 39248143 - 39248207
Alignment:
Q  4 agttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaa 68  Q
    ||||||||||| |||||| ||| |||| ||| |||||| | |||||||| |||||||||||||||    
T  39248143 agttgaaaacagcttatgaacaagtcataagctgtttttataagttctcccaaacagtctcacaa 39248207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 10152388 - 10152451
Alignment:
Q  14 aacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatg 77  Q
    ||||||||||||||||| |||||||||||| ||| ||||  ||| ||||||||| | |||||||    
T  10152388 aacttatggacatgtcataagttgttttcataagctctccaaaatagtctcacatgtgcttatg 10152451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 11095511 - 11095456
Alignment:
Q  14 aacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaag 69  Q
    ||||||||||||||||| ||| ||||| || ||||||||||||||| | |||||||    
T  11095511 aacttatggacatgtcataagctgtttccacaagttctctcaaacaatatcacaag 11095456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 25705688 - 25705649
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttt 40  Q
    |||||||||||||| ||||| |||||||||||||||||||    
T  25705688 ataagttgaaaacagcttatagacatgtcacaagttgttt 25705649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 37526228 - 37526161
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaa 68  Q
    ||||| |||||||| |||||  |||||||| | ||||| |||| ||| ||||||||||||||||||||    
T  37526228 ataagctgaaaacagcttattaacatgtcataggttgtattcataagctctctcaaacagtctcacaa 37526161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 37690665 - 37690598
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaa 68  Q
    ||||| |||||||| |||||  |||||||| | ||||| |||| ||| ||||||||||||||||||||    
T  37690665 ataagctgaaaacagcttattaacatgtcataggttgtattcataagctctctcaaacagtctcacaa 37690598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 32172709 - 32172771
Alignment:
Q  16 cttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatgc 78  Q
    ||||||||||||||| ||||||||| || ||| |||| |||||  ||||||||| ||||||||    
T  32172709 cttatggacatgtcataagttgtttccataagctctcccaaactatctcacaagtgcttatgc 32172771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 38766574 - 38766524
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttct 51  Q
    |||||| ||||||||||||||||| ||||| ||||||||| || |||||||    
T  38766574 ataagtcgaaaacaacttatggacgtgtcataagttgtttccataagttct 38766524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 2092572 - 2092535
Alignment:
Q  3 aagttgaaaacaacttatggacatgtcacaagttgttt 40  Q
    ||||||||||||||||||||||||| || |||||||||    
T  2092572 aagttgaaaacaacttatggacatgccataagttgttt 2092535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 10907426 - 10907487
Alignment:
Q  8 gaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaag 69  Q
    ||||||| ||||| |||||| || |||||||||||| ||| |||  ||||||||||||||||    
T  10907426 gaaaacagcttattgacatgacataagttgttttcataagctcttccaaacagtctcacaag 10907487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 29363055 - 29363100
Alignment:
Q  7 tgaaaacaacttatggacatgtcacaagttgttttcaaaagttctc 52  Q
    |||||||||||||||| ||||||| |||||||||||| ||| ||||    
T  29363055 tgaaaacaacttatgggcatgtcataagttgttttcataagctctc 29363100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 36639570 - 36639639
Alignment:
Q  8 gaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatg 77  Q
    |||||||||||||||||| |||| |||   |||||  ||||||||||||||||||| | ||| |||||||    
T  36639570 gaaaacaacttatggacacgtcataagcaattttcgtaagttctctcaaacagtcttataagtgcttatg 36639639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 38047893 - 38047840
Alignment:
Q  16 cttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaag 69  Q
    ||||||||||||||| ||||||||| || ||| |||| ||||||||| ||||||    
T  38047893 cttatggacatgtcataagttgtttccataagctctcccaaacagtcacacaag 38047840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 499760 - 499684
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttatg 77  Q
    ||||| |||||||||||| |  |||||||| ||| |||||||| |||||||| ||||||| || ||| | |||||||    
T  499760 ataagctgaaaacaacttgttaacatgtcataagctgttttcataagttctcccaaacagcctaacaggtgcttatg 499684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 10125747 - 10125679
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaag 69  Q
    ||||| |||||||| |||||  |||||||| ||||||||| || ||||||||||| ||| | |||||||    
T  10125747 ataagctgaaaacaccttatcaacatgtcataagttgtttacataagttctctcagacaatgtcacaag 10125679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 23160718 - 23160766
Alignment:
Q  9 aaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaa 57  Q
    ||||||||  |||||||||||| |||||||||||||||| |||| ||||    
T  23160718 aaaacaacccatggacatgtcataagttgttttcaaaagatctcccaaa 23160766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 29590658 - 29590594
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctca 65  Q
    ||||||||||||||||||||||||| |||| ||||| | | || ||| |  ||||||||||||||    
T  29590658 ataagttgaaaacaacttatggacaagtcataagttttgtccataagctaactcaaacagtctca 29590594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 34690914 - 34690954
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgtttt 41  Q
    |||||| || ||||||||||||||||||||||| |||||||    
T  34690914 ataagtcgataacaacttatggacatgtcacaatttgtttt 34690954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 10646 - 10578
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaag 69  Q
    ||||| ||||||||||||||||||||||||  |||||||| || ||| | | |||||||||||||||||    
T  10646 ataagctgaaaacaacttatggacatgtcattagttgtttacataagctttgtcaaacagtctcacaag 10578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0608 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 9658 - 9606
Alignment:
Q  9 aaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagt 61  Q
    |||||| |||||| |||||| | |||||||||||| |||||||||||||||||    
T  9658 aaaacagcttatgaacatgtaataagttgttttcataagttctctcaaacagt 9606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 12732 - 12694
Alignment:
Q  2 taagttgaaaacaacttatggacatgtcacaagttgttt 40  Q
    |||| |||||||||||||||||||||||| |||||||||    
T  12732 taagctgaaaacaacttatggacatgtcataagttgttt 12694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 16151 - 16179
Alignment:
Q  1 ataagttgaaaacaacttatggacatgtc 29  Q
    |||||||||||||||||||||||||||||    
T  16151 ataagttgaaaacaacttatggacatgtc 16179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University