View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2982_low_1 (Length: 1528)
Name: NF2982_low_1
Description: NF2982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2982_low_1 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 650; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 650; E-Value: 0
Query Start/End: Original strand, 20 - 747
Target Start/End: Original strand, 44972351 - 44973078
Alignment:
| Q |
20 |
atcattatgtgtattgtaaagagtgcccaattgagaggactaagaatgagaccaaacctgaaccatgcaagggacatctggttaggaagtttataaagga |
119 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44972351 |
atcatgatgtgtattgtaaagagtgcccaattgagaggactaagaatgagaccaaacctgaaccatgcaagggacatctggttaggaagtttataaagga |
44972450 |
T |
|
| Q |
120 |
gtgctggaggaaatgtggatgtgtaatgcagtgtggaaatcgggtagtgcaacgaggtttaagccgtaaattgcccaagggatactttgtctgtgaatat |
219 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44972451 |
gtgctggaggaaatgtggatgtgtgatgcagtgtggaaatcgggtagtgcaacgaggtttaagccgtaaattgcccaagggatactttgtctgtgaatat |
44972550 |
T |
|
| Q |
220 |
gcaggggagattttaaccaattcagaattatatgacaggattgtgtatagtaccggcattatgcttggatgcaacacataat--gggaatgttgcaagat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
44972551 |
gcaggggagattttaaccaattcagaattatatgacaggattgtgtatagtaccggcattatgcttggatgcaacacataatatgggaatgttgcaagat |
44972650 |
T |
|
| Q |
318 |
tcatcgatcataggttcttttcaaatttcaataatatattacattttaagaatttctactgtcatttcatttctattgaactttgatctgttgcatggcc |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44972651 |
tcatcgatcataggttcttttcaaatttcaataatatattacattttaagaatttctactgtcatttcatttctattgaactttgatctgttgcatggcc |
44972750 |
T |
|
| Q |
418 |
ttaagcttttgcgagagctttcaatttcttctcttcttgttgaagttaactccaaggagtgttgcaacttttcataattttgttgatctccacgccaata |
517 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44972751 |
ttaagcttttgcgagagctttaaatttcttctcttcttgttgaagttaactccaaggagtgttgcaacttttcataattttgttgatctccacgccaata |
44972850 |
T |
|
| Q |
518 |
taaatcatcttaaaattttcttggactattgtggatgttccttctcccccaacttagtctttattttttatttaatagtgttccttagcttcatttttca |
617 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44972851 |
taaatcatcttaaaatttacttggactattgtggatgttccttctcccccaacttagtctttattttttatttaatagtgttccttagcttcatttttca |
44972950 |
T |
|
| Q |
618 |
ttnnnnnnnnnnnnnnnngtaagataacatgctttgacttgattaaaatacaacgtgtttttagtttcatatatgaaaattggcggtgtgtgtggaacaa |
717 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44972951 |
tt--aaaaaaaaaaaaaagtaagataacatgctttgacttgattaaaatacaacgtgtttttagtttcatatatgaaaattggcggtgtgtgtggaacaa |
44973048 |
T |
|
| Q |
718 |
gctggccatcttacaatcgatgacttcacc |
747 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
44973049 |
gctggccatcttacaatcgatgacttcacc |
44973078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1193 - 1508
Target Start/End: Original strand, 44973517 - 44973832
Alignment:
| Q |
1193 |
caatcaatcatacgtgcaagacttcttgagggaaacagaaacattgattttcttgggatcaaaaacgacagaacaatgaaccttcttgtagtattttggc |
1292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
44973517 |
caatcaatcatacgtgcaagacttcttgagggaaacagaaacattgattttcttgggatcaaatacgacagaacaatgaaccttcttgtagtattttggc |
44973616 |
T |
|
| Q |
1293 |
ttgaccaatttcccaagcacataagctctagatctaatttcaaagctcaattttaatggtactggcaaagttggcataccagttgtgctgctaagactgg |
1392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
44973617 |
ttgaccaatttcccaagcacataagctctagatctaatttcaaagctcaattttaatggtactggcaaagttggcataccagttgtgctgctaagacttg |
44973716 |
T |
|
| Q |
1393 |
caccacttccatacaatggaatcttgctccccatcactgccacactaactagtctttgactcctccttgattgataaaacttcttcatctgcaatcacaa |
1492 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44973717 |
caccacttccatacaatggaatcttgctccccatcactgccacactaactagtctttgactcctccttgattgataaaacttcttcatctgcaatcacaa |
44973816 |
T |
|
| Q |
1493 |
atccatatgattatca |
1508 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
44973817 |
atccatatgattatca |
44973832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 924 - 1139
Target Start/End: Original strand, 44973252 - 44973469
Alignment:
| Q |
924 |
aattaaaaagtagaaaaaggtaatcgtgagtaacaagtttccaccgaatccaaacatgtctttctttatgctactagaacttagagaatgtggagtgtta |
1023 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44973252 |
aattaaaaagtagaaaaaggtaatcgtgagtaacaagtttccaccgaatccaaacatgtctttctttatgctactagaacttagagaatgtggagtgtta |
44973351 |
T |
|
| Q |
1024 |
aaaacgaacagccaaaagtgtcacaaaaacgcgtttttccatttctcattcctatgagc--tgtatccccttttgttttttcctcaaccaatgaatcact |
1121 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44973352 |
aaaatgaacagccaaaagtgtcacaaaaacgcgtttttccatttcttattcctatgagctgtgtatccccttttgttttttcctcaaccaatgaatcact |
44973451 |
T |
|
| Q |
1122 |
tttctatgattattttat |
1139 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
44973452 |
tttctatgattattttat |
44973469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 134; E-Value: 5e-69
Query Start/End: Original strand, 772 - 913
Target Start/End: Original strand, 44973069 - 44973210
Alignment:
| Q |
772 |
tgacatcaccaactaatcaaagaataattcaacttatatcacaaactaatcaacgaatgattcaactttttgggctataattacactataataattcaac |
871 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44973069 |
tgacttcaccaactaatcaaagaataattcaacttatatcacaaactaatcaacgaatgattcaactttttgggctataattacactataataattcaac |
44973168 |
T |
|
| Q |
872 |
tgtaaaaatgaaattacaaaattcagatcgaatacaatacat |
913 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
44973169 |
tgtaaaaatgaaattacaacattcagatcgaatacaatacat |
44973210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 150; Significance: 1e-78; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 1e-78
Query Start/End: Original strand, 20 - 193
Target Start/End: Complemental strand, 35687257 - 35687084
Alignment:
| Q |
20 |
atcattatgtgtattgtaaagagtgcccaattgagaggactaagaatgagaccaaacctgaaccatgcaagggacatctggttaggaagtttataaagga |
119 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35687257 |
atcattatgtgttttgtaaggagtgcccaattgagaggaccaagaatgagaccaaacctgaatcatgcaagggacatctggttaggaagtttataaagga |
35687158 |
T |
|
| Q |
120 |
gtgctggaggaaatgtggatgtgtaatgcagtgtggaaatcgggtagtgcaacgaggtttaagccgtaaattgc |
193 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35687157 |
gtgctggaggaaatgtggatgtgacatgcagtgtggaaatcgggtagtgcaacgaggtttaagccgtaaattgc |
35687084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 145; E-Value: 1e-75
Query Start/End: Original strand, 20 - 193
Target Start/End: Complemental strand, 28537496 - 28537319
Alignment:
| Q |
20 |
atcattatgtgtattgtaaagagtgcccaattgagaggactaagaatgagaccaaacctgaaccatgca----agggacatctggttaggaagtttataa |
115 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
28537496 |
atcattatgtatattgtaaagagtgcccaattgagaggactaagaatgagaccaaacctgaaccatgcatgcaaggggcatctggttaggaagtttataa |
28537397 |
T |
|
| Q |
116 |
aggagtgctggaggaaatgtggatgtgtaatgcagtgtggaaatcgggtagtgcaacgaggtttaagccgtaaattgc |
193 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28537396 |
aggagtgctggaggaaatgtggatgtgacatgcagtgtggaaatcgggtagtgcaacgaggtttaagccgtaaattgc |
28537319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 84; E-Value: 3e-39
Query Start/End: Original strand, 190 - 277
Target Start/End: Complemental strand, 35686534 - 35686447
Alignment:
| Q |
190 |
ttgcccaagggatactttgtctgtgaatatgcaggggagattttaaccaattcagaattatatgacaggattgtgtatagtaccggca |
277 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35686534 |
ttgcccaagggatcctttgtctgtgaatatgcaggggagattttaaccaattcagaattatatgacaggattgtgtatagtaccggca |
35686447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 72; E-Value: 5e-32
Query Start/End: Original strand, 274 - 357
Target Start/End: Complemental strand, 35686376 - 35686293
Alignment:
| Q |
274 |
ggcattatgcttggatgcaacacataatgggaatgttgcaagattcatcgatcataggttcttttcaaatttcaataatatatt |
357 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
35686376 |
ggcattatgcttggatgcaacaaataatgggaatgttgcaagattcatcaatcataggtgcttttcaaatttcaataatatatt |
35686293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 69; E-Value: 3e-30
Query Start/End: Original strand, 193 - 277
Target Start/End: Complemental strand, 28536642 - 28536558
Alignment:
| Q |
193 |
cccaagggatactttgtctgtgaatatgcaggggagattttaaccaattcagaattatatgacaggattgtgtatagtaccggca |
277 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
28536642 |
cccaagggatcctttgtcagtgaatatgcaggggagattttaaccaattaagaattatatgacaggattgtgtgtagtaccggca |
28536558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 48472631 - 48472679
Alignment:
| Q |
190 |
ttgcccaagggatactttgtctgtgaatatgcaggggagattttaaccaa |
239 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
48472631 |
ttgcccaagggatcctttgtctgtgaatatg-tggggaaattttaaccaa |
48472679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 118; Significance: 2e-59; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 2e-59
Query Start/End: Original strand, 57 - 190
Target Start/End: Complemental strand, 7723677 - 7723544
Alignment:
| Q |
57 |
gactaagaatgagaccaaacctgaaccatgcaagggacatctggttaggaagtttataaaggagtgctggaggaaatgtggatgtgtaatgcagtgtgga |
156 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
7723677 |
gactaagattgagaccaaacctgaaccatgcaagggacatctggttaggaagtttataaaggagtgctggaggaaatgtggatgtgacatgcagtgtgga |
7723578 |
T |
|
| Q |
157 |
aatcgggtagtgcaacgaggtttaagccgtaaat |
190 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |
|
|
| T |
7723577 |
aatcgggtagtgcaatgaggtttaagccgtaaat |
7723544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 1e-26
Query Start/End: Original strand, 1365 - 1487
Target Start/End: Complemental strand, 30583315 - 30583193
Alignment:
| Q |
1365 |
ggcataccagttgtgctgctaagactggcaccacttccatacaatggaatcttgctccccatcactgccacactaactagtctttgactcctccttgatt |
1464 |
Q |
| |
|
|||||||| || ||||||||||| || ||||||||||||||||| || | |||||| ||||||||||||||||| || | ||| ||||||||||| |||| |
|
|
| T |
30583315 |
ggcatacctgtggtgctgctaaggctagcaccacttccatacaaagggaccttgctacccatcactgccacactcaccaatctatgactcctcctagatt |
30583216 |
T |
|
| Q |
1465 |
gataaaacttcttcatctgcaat |
1487 |
Q |
| |
|
||| ||||| ||||||||||||| |
|
|
| T |
30583215 |
gatgaaactccttcatctgcaat |
30583193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 7723958 - 7723917
Alignment:
| Q |
20 |
atcattatgtgtattgtaaagagtgcccaattgagaggacta |
61 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7723958 |
atcattatgtgtattgtaaagagtgcccaattgagaggacta |
7723917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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