View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2982_low_10 (Length: 319)
Name: NF2982_low_10
Description: NF2982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2982_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 282
Target Start/End: Original strand, 33080865 - 33081137
Alignment:
| Q |
19 |
cagatgcccggcacagcatcacctacaatgtagtaagctgctgcaccaagagaatccacactagatgtgtcaaaccatatatcagaagtacctgctttaa |
118 |
Q |
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| T |
33080865 |
cagatgcccggcacagcatcacctacaatgtagtaagctgctgcaccaagagaatccacactagatgtgtcaaaccatatatcagaagtacctgctttaa |
33080964 |
T |
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| Q |
119 |
tcatcacattcttaactaccccaagtataataaataaactcacaatgcacta---------gctacagacatggccagattaattaactacatatataaa |
209 |
Q |
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| T |
33080965 |
tcatcacattcttaactaccccaagtataataaataaactcacaatgcactattagactttgctgcagacatggccagattaattaactacatatataaa |
33081064 |
T |
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| Q |
210 |
ctacaacaccgacaagtaaaacatcattcccaccatcacacacaaacaaaacagcatttctaaagccaaacca |
282 |
Q |
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| T |
33081065 |
ctacaacaccgacaagtaaaacatcattcccaccatcacacacaaacacaacagcatttctaaagccaaacca |
33081137 |
T |
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Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 30 - 124
Target Start/End: Complemental strand, 6189811 - 6189720
Alignment:
| Q |
30 |
cacagcatcacctacaatgtagtaagctgctgcaccaagagaatccacactagatgtgtcaaaccatatatcagaagtacctgctttaatcatca |
124 |
Q |
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| T |
6189811 |
cacatcatcacctacactgtagtaagttgc---accaagagaatctaaactagatgtgtcaagccatatatcagaaatatctgctttaatcatca |
6189720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 30 - 126
Target Start/End: Original strand, 7690348 - 7690441
Alignment:
| Q |
30 |
cacagcatcacctacaatgtagtaagctgctgcaccaagagaatccacactagatgtgtcaaaccatatatcagaagtacctgctttaatcatcaca |
126 |
Q |
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| T |
7690348 |
cacatcatcacctacaatgcagtaagctg---caccaagagaatctaaactagatgtgtcaagccatatatcataaatatatgctttaatcatcaca |
7690441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 29970778 - 29970835
Alignment:
| Q |
78 |
actagatgtgtcaaaccatatatcagaagtacctgctttaatcatcacattcttaact |
135 |
Q |
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| T |
29970778 |
actagatgtgtcaaactatatatcagaagtacctgctttattcatcattttcttaact |
29970835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 126
Target Start/End: Complemental strand, 16433202 - 16433156
Alignment:
| Q |
80 |
tagatgtgtcaaaccatatatcagaagtacctgctttaatcatcaca |
126 |
Q |
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| T |
16433202 |
tagatgtgtcaagccatatatcagaaatatctgctttaatcatcaca |
16433156 |
T |
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