View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2982_low_11 (Length: 315)
Name: NF2982_low_11
Description: NF2982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2982_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 19 - 303
Target Start/End: Complemental strand, 40846563 - 40846279
Alignment:
| Q |
19 |
ctaagaccatcatacagttcaatgtgaagacagtgccttcctcaacactaacacgagaaataccctgcaacatataacagatttccataatgcatcttca |
118 |
Q |
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| T |
40846563 |
ctaagaccatcacacagttcaatgtgaagacagtgccttcctcaacactaacacgagaaataccctgcaacatataacagatttccataatgcatcttca |
40846464 |
T |
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| Q |
119 |
aagaactttaaattgaggttgttacactccatcaaatacaccgcattgttaaacaaattaaatgagacactttcactagaaccttggaatcatcgccaaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
40846463 |
aagaactttaaattgaggttgttacactccatcaaatacaccgcatcgttaaccaaattaaatgagacactttcattagaaccttgggatcatcgccaaa |
40846364 |
T |
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| Q |
219 |
tgagacattgccacttactgattcatcaagctccacaaacattctccttttttcacacatatggttgaattttctttgattcctt |
303 |
Q |
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| T |
40846363 |
tgagacattgccacttactgattcatcaagctccacaaacattctccttttttcacacatatggttgaattttctttgattcctt |
40846279 |
T |
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Back To:
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Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 189 - 281
Target Start/End: Original strand, 4890548 - 4890640
Alignment:
| Q |
189 |
tttcactagaaccttggaatcatcgccaaatgagacattgccacttactgattcatcaagctccacaaacattctccttttttcacacatatg |
281 |
Q |
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| T |
4890548 |
tttcactggaatcttggaatcatcgccaaatgagacattgccacacactgattcatcaagctctacaaacatgctccttttcccacacatatg |
4890640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 201 - 285
Target Start/End: Complemental strand, 34646063 - 34645979
Alignment:
| Q |
201 |
cttggaatcatcgccaaatgagacattgccacttactgattcatcaagctccacaaacattctccttttttcacacatatggttg |
285 |
Q |
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| T |
34646063 |
cttggaatcgtcgacaaatgagacaattccacttaatgattcatcaagttttacgaacatgctcctatttccacacatatggttg |
34645979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 253
Target Start/End: Original strand, 21745757 - 21745796
Alignment:
| Q |
214 |
ccaaatgagacattgccacttactgattcatcaagctcca |
253 |
Q |
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| T |
21745757 |
ccaaatgagacattgtcacttactgattcatcaagatcca |
21745796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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