View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2982_low_2 (Length: 1017)
Name: NF2982_low_2
Description: NF2982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2982_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 893; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 893; E-Value: 0
Query Start/End: Original strand, 18 - 1005
Target Start/End: Original strand, 36994864 - 36995852
Alignment:
| Q |
18 |
gtattagtgttagttttgagtccgaattcacaacatataggttggcctgct-----taagccacatatgctcagagtcttcaccttcctagatttatcat |
112 |
Q |
| |
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||||| |||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36994864 |
gtattggtgtgagttttgagtcagaattcacaacatataggttggcctgctatgcttaagccacatatgctcagagtcttcaccttcctagatttatcat |
36994963 |
T |
|
| Q |
113 |
agtggattaaacaattgtcaatgaaagcttctagcagaggtgtttgaatgtggccccaatgcttatgcagagtggacttgagaagtagtatggtcctttg |
212 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36994964 |
agtggattaaacaattgtcaatgaaagcatctagcagaggtgtttgaatgtggccccaatgcttatgcagagtggacttgagaagtagtatggtcctttg |
36995063 |
T |
|
| Q |
213 |
ctatattctgcatcgtgaacagaagacaagaaaactgaaggaatagatacggatggtgtgggtctaatgtggagtacaggattgctaatattcagtaaaa |
312 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36995064 |
ccatattctgcatcgtgaacagaagacaagaaaactgaaggaatagatacggatggtgtgggtctaatgtggagtacaggattgctaatattcagtaaaa |
36995163 |
T |
|
| Q |
313 |
gaaagtttcacaaaaggatcatgaatacaaaaggatcaggaaaagattaaaacttagattcttatcacttaagaagataactaatatttggtgcaaaaaa |
412 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
36995164 |
gaaagtttcacaaaaggatcatgaatgcaaaaggatcaggaaaagattaaaacttagatt------acttaagaagataactaatatttggtgcaaaaaa |
36995257 |
T |
|
| Q |
413 |
tttcttgcaaaatctgct--gtcaaagtaggatcaacagacaacatatatacacactagaaacgtgggtaaaaatagtatgtcaaatgtgtgattagata |
510 |
Q |
| |
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|||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36995258 |
tttcttacaaaatctgctatgtcaaagtaggatcaacagacaacatatacacacactagaaacgtgggtaaaaatagtatgtcaaatgtgtgattagata |
36995357 |
T |
|
| Q |
511 |
aatttcgaagaaacttttcatgcaaatgctgtcaaaaataatacgcattttccattttagaatcagcaatgttatggtacagctattatcagtggagaag |
610 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36995358 |
aatttcgaagaaacttttcatgcaaatgctgtcaaaaataataagcattttccattttagaatcagcaatgttatggtacagctattatcagtggagaag |
36995457 |
T |
|
| Q |
611 |
gcttgctacaccaattttcttttcaactttcaagcaaatatccttctaacatggttatctcaagtaactatcaacttttaacattagacaagtgcttcca |
710 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36995458 |
gcttgctacaccaattttcttttcaactttcaagcaaatatccttctaacatggttatctcaagtaactatcaacttttaacattagacaagtgcttcca |
36995557 |
T |
|
| Q |
711 |
ccctttaatgtgagaggccacgtagtcctcacttggaagcatgatattacagactttacatattattttggaattaatcatcctaataggttctgatagg |
810 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36995558 |
cccttttatgtgagaggccacgtagtcctcacttggaagcataatattacagactttacatattattttggaattaatcatcctaataggttctgatagg |
36995657 |
T |
|
| Q |
811 |
ttcttttgcagggtagtttgcttctttgctttcaacacttccatagtttccctgtgtctccttcccctgaggtgggaaatcaaggttttctcacacgtaa |
910 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36995658 |
ttcttttgcagggtaggttgcttctttgctttcaacacttccatagtttccctgtgtctccttcccctgaggtgggaaatcaaggttttctcacacgtaa |
36995757 |
T |
|
| Q |
911 |
ccgttaccaaacataaagcacaagtccactctttctgcactgccttctgtgtagaactctgaggaacctctccacaagctgtgacactctctgct |
1005 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36995758 |
ccgttaccaaacataaagcacaagtccactctttctgcactgccttctgtgtagaactctgaggaacctctccacaagctgtgacactctctgct |
36995852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 555 - 845
Target Start/End: Original strand, 36979495 - 36979784
Alignment:
| Q |
555 |
gcattttccattttagaatcagcaatgttatggtacagctatta---tcagtggagaaggcttgctacaccaattttcttttcaactttcaagcaaa-ta |
650 |
Q |
| |
|
||||||||||||| ||||| |||||||| ||||||| || || ||||| ||||| |||||||| ||||||| |||||||||||||||||||| | |
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|
| T |
36979495 |
gcattttccatttaagaattggcaatgttttggtacacttaataatatcagtcaagaag-cttgctaccccaatttgcttttcaactttcaagcaaaatg |
36979593 |
T |
|
| Q |
651 |
tccttctaacatggttatctcaagtaactatcaacttttaacattagacaagtgcttccaccctttaatgtgagaggccacgtagtcctcacttggaagc |
750 |
Q |
| |
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||| | ||||||||| || ||||||||||||| || ||||||||||||||||| || || | |||||| |||| || ||||||||||||||| |
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| T |
36979594 |
tccctacgctatggttatc--aa--aactatcaactttgaattttagacaagtgcttccatccatttacgtgagatgccatatactcctcacttggaagc |
36979689 |
T |
|
| Q |
751 |
atgatattacagactttacatattattttggaattaatcatcctaataggttctgataggttcttttgcagggtagtttgcttctttgctttcaa |
845 |
Q |
| |
|
|| | |||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||| ||| | | || |||||||||||||||||| |
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|
| T |
36979690 |
ataacattacagactttacatattaatttggaattaatcatcctaaagggttctgaagggttcttctgcggagcaggttgcttctttgctttcaa |
36979784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 556 - 796
Target Start/End: Original strand, 37000120 - 37000363
Alignment:
| Q |
556 |
cattttccattttagaatcagcaatgttatggtacagctattatcagtggagaaggcttgctacaccaattttcttttcaactttcaagcaaa---tatc |
652 |
Q |
| |
|
|||||||||||| | ||||||||| ||| |||||||||| |||| |||| |||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
37000120 |
cattttccatttgaaaatcagcaaagttttggtacagctgttataagtgaagaaggcttgctacaccaatttccttttcaactttcaagcaaaatgtatc |
37000219 |
T |
|
| Q |
653 |
cttctaacatggttatctcaagtaactatcaacttttaacattagacaagtgcttccaccctttaatgtgagaggccacgtagtcctcacttggaagcat |
752 |
Q |
| |
|
| | | | |||||||| || |||| |||| ||| || |||||||||||||| |||| | | ||||||||||| ||| || ||||||| || || |
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|
| T |
37000220 |
cctgtggtaaggttatctacagcaactttcaagtttgaattttagacaagtgctttttccctattaagtgagaggccatgtattcttcacttgaaatcaa |
37000319 |
T |
|
| Q |
753 |
gatattacagactttacatattattttggaattaatcatcctaa |
796 |
Q |
| |
|
| ||| |||||| ||||||||||||||||||||||| |||||| |
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| T |
37000320 |
aacattgcagactatacatattattttggaattaatcctcctaa |
37000363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 821 - 1005
Target Start/End: Original strand, 36980497 - 36980681
Alignment:
| Q |
821 |
gggtagtttgcttctttgctttcaacacttccatagtttccctgtgtctccttcccctgaggtgggaaatcaaggttttctcacacgtaaccgttaccaa |
920 |
Q |
| |
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|||||| ||||||||||| | | || |||| |||| ||||||||| ||||||| | ||||||||||||||| |||||||| || |||||||| |
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| T |
36980497 |
gggtaggttgcttctttgatattaaagcttcactagtatccctgtgtttccttccattaaggtgggaaatcaagtctttctcacgcgatgttgttaccaa |
36980596 |
T |
|
| Q |
921 |
acataaagcacaagtccactctttctgcactgccttctgtgtagaactctgaggaacctctccacaagctgtgacactctctgct |
1005 |
Q |
| |
|
||||| |||||||||||||||| |||||||| ||||||||||||||||| ||||||| ||||||| ||| | ||||||||||| |
|
|
| T |
36980597 |
acatatagcacaagtccactctctctgcacttccttctgtgtagaactccgaggaacttctccaccagccctttcactctctgct |
36980681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 862 - 985
Target Start/End: Original strand, 36986225 - 36986354
Alignment:
| Q |
862 |
ctgtgtctccttcccctgaggtgggaaatcaaggttttctcacacgtaaccgttaccaaacataaagcacaagtccactctttctgcactgccttctgt- |
960 |
Q |
| |
|
|||||| || |||| || ||||||||| ||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
36986225 |
ctgtgtttctttccactcaggtgggaattcaagattttctcactcgttgttgttaccaaacataaagcacaagtccactctttctgcacttccttctgtg |
36986324 |
T |
|
| Q |
961 |
-----gtagaactctgaggaacctctccac |
985 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
36986325 |
tagaagtagaactctgaggaacctctccac |
36986354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 913 - 991
Target Start/End: Original strand, 36979855 - 36979939
Alignment:
| Q |
913 |
gttaccaaacataaagcacaagtccactctttctgcactgccttctgt------gtagaactctgaggaacctctccacaagctg |
991 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||| ||||||||||||||| ||||| |
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|
| T |
36979855 |
gttaccaaacataaagcacaagtccactctttcggcacttccttctgtgtagcagtagaactcggaggaacctctccaccagctg |
36979939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 913 - 1005
Target Start/End: Original strand, 36996464 - 36996556
Alignment:
| Q |
913 |
gttaccaaacataaagcacaagtccactctttctgcactgccttctgtgtagaactctgaggaacctctccacaagctgtgacactctctgct |
1005 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| | ||||||||||| || || |||| |||||||| |||| || ||||||||||| |
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| T |
36996464 |
gttaccaaacataaagcacaagtccactttttctgcatttccttctgtgtacaatcctttggaaactctccaccagctctgtcactctctgct |
36996556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 883 - 956
Target Start/End: Original strand, 36984452 - 36984525
Alignment:
| Q |
883 |
tgggaaatcaaggttttctcacacgtaaccgttaccaaacataaagcacaagtccactctttctgcactgcctt |
956 |
Q |
| |
|
|||||| |||| ||||| ||||| | ||| |||||||||||||||||||| | |||||||||||||||| |||| |
|
|
| T |
36984452 |
tgggaattcaatgttttttcacatggaactgttaccaaacataaagcacatgcccactctttctgcacttcctt |
36984525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 921 - 1001
Target Start/End: Original strand, 37000473 - 37000556
Alignment:
| Q |
921 |
acataaagcacaagtccactctttctgcactgccttctgtgt---agaactctgaggaacctctccacaagctgtgacactctc |
1001 |
Q |
| |
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|||||||||||||||||||| ||| ||||| |||||||||| |||||||||||| | ||| |||| ||| ||| ||||||| |
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| T |
37000473 |
acataaagcacaagtccacttcttcggcacttccttctgtgtagcagaactctgaggtagctccccactagcagtgtcactctc |
37000556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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