View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2982_low_3 (Length: 771)
Name: NF2982_low_3
Description: NF2982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2982_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 718; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 718; E-Value: 0
Query Start/End: Original strand, 1 - 754
Target Start/End: Complemental strand, 38486519 - 38485766
Alignment:
| Q |
1 |
ctgtaaatatatgttccctcactgccaaaataaatggttttcgaataccatagtaaagcttgaattcttccaagagaatacgtactttaagtgcatactc |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||| | ||| |
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| T |
38486519 |
ctgtaaatatatgttccctcactcccaaaatagttggttttcgaataccatagtaatgcttgaattcttccaagagatttcgtactttaagtgcctcctc |
38486420 |
T |
|
| Q |
101 |
aaagtagttgtcctggttcatatcaatagtttgaattgcatccccgcgagtgaatatgatggcgtggttttgattttccggctttccttctccaagtttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38486419 |
aaagtagttgtcctggttcatatcaatagtttgaattgcatccccgcgagtgaatatgatggcgtggttttgattttccggctttccttctccaagtttc |
38486320 |
T |
|
| Q |
201 |
aagggacctggcaattttacacggtatatttccacctccctctccagctgttggtcatacttaacaagaacagaataatagtccttctcattctcatccc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38486319 |
aagggacctggcaattttacacggtatatttccacctccctctccagctgttggtcatacttaacaagaacagaataatagtccttctcattctcatccc |
38486220 |
T |
|
| Q |
301 |
tccctgtgcgaacctcatcaacataggcaactcttagggcttcattgtttttcattaaatacaaaatttcatcggcatgaggatcctttcttgccttttg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38486219 |
tccctgtgcgaacctcatcaacataggcaactcttagggcttcattgtttttcattaaatacaaaatttcatcggcatgaggatcctttcttgccttttg |
38486120 |
T |
|
| Q |
401 |
agttccatatatctgacaagcaatcacatatgtgaatttcattaatgcagttccatagtcatggcctttgaacaaacttactgtactgcttgcttcagaa |
500 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38486119 |
agttccatatatctgacaagcgatcacatatgtgaatttcattaatgcagttccatagtcatggcctttgaacaaacttactgtactgcttgcttcagaa |
38486020 |
T |
|
| Q |
501 |
aatgatgacttttgcgagttgataccgtctggaatatcttgattcgttggaacaagttcacgtgagccttctgtgatctctacttctgatgcagaatcta |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38486019 |
aatgatgacttttgcgagttgataccgtctggaatatcttgattcgttggaacaagttcacgtgagccttctgtgatctctacttctgatgcagaatcta |
38485920 |
T |
|
| Q |
601 |
gaaaagccaaaagcttgagggccttatagtagtacatcattcctctaacagtccgcgatagtgtctggcctctataggatgcccatgacctcaattctct |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38485919 |
gaaaagccaaaagcttgagggccttatagtagtacatcattcctctaacagtccgcgatagtgtctggcctctataggatgcccatgacctcaattctct |
38485820 |
T |
|
| Q |
701 |
tagtttatctgtccatatctcacggtctttcatcatcccctctcgcctcattct |
754 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38485819 |
tagtttatctgtccatatctcacggtctttcatcatcccctctcgcctcattct |
38485766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 215
Target Start/End: Complemental strand, 3685653 - 3685536
Alignment:
| Q |
98 |
ctcaaagtagttgtcctggttcatatcaatagtttgaattgcatccccgcgagtgaatatgatggcgtggttttgattttccggctttccttctccaagt |
197 |
Q |
| |
|
|||||| || ||||| || |||||||| || || ||||||||||| || || || || || || || || || ||||||||||| || |||||||||||| |
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|
| T |
3685653 |
ctcaaaataattgtcttgattcatatctatggtctgaattgcatcaccccgcgtaaagatcattgcatgattctgattttccggtttcccttctccaagt |
3685554 |
T |
|
| Q |
198 |
ttcaagggacctggcaat |
215 |
Q |
| |
|
|| || ||||| |||||| |
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|
| T |
3685553 |
tttaaaggaccaggcaat |
3685536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 4e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 98 - 490
Target Start/End: Complemental strand, 30120821 - 30120432
Alignment:
| Q |
98 |
ctcaaagtagttgtcctggttcatatcaatagtttgaattgcatccccgcgagtgaatatgatggcgtggttttgattttccggctttccttctccaagt |
197 |
Q |
| |
|
|||||||||||| ||||| ||||| || ||||| || | || |||||||||||||| ||||||||||| |||||||| || |||||||| || || || |
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|
| T |
30120821 |
ctcaaagtagttatcctgattcatgtctatagtctgcaaagcgtccccgcgagtgaagatgatggcgtgattttgattctcgggctttccctccccgagc |
30120722 |
T |
|
| Q |
198 |
ttcaagggacctggcaattttacacggtatatttccacctccctctccagctgttggtcatacttaacaagaacagaataatagtccttctcattctcat |
297 |
Q |
| |
|
||||| ||||| |||| ||| || | ||||| ||| |||||| | |||| ||| || |||||||||||||| ||||| |||| |||||| | | |
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|
| T |
30120721 |
ttcaatggacccggcagtttgactctgtatacttcaacctccttttccaactgctgatcatacttaacaaggacagagaaatactccttcccgt------ |
30120628 |
T |
|
| Q |
298 |
ccctccctgtgcgaacctcatcaacataggcaactcttagggcttcattgtttttcattaaatacaaaatttcatcggcatgaggatcctttcttgcctt |
397 |
Q |
| |
|
|||| || || |||||| ||||| ||||||| || ||||||||||||||||||| |||||||||||| || ||||| |||||||| || |||| |
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|
| T |
30120627 |
cccttccagtagttctctcatccacatatgcaactcgaagagcttcattgtttttcattagatacaaaatttcctcagcatggggatccttcttttcctt |
30120528 |
T |
|
| Q |
398 |
ttgagttccatatatctgacaagcaatcacatatgtgaatttcattaatgcagttccatagtcatggccttt---gaacaaacttactgtactgct |
490 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||||||||| || ||||| ||||| || |||||||| ||||||||||||| |||||| |
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|
| T |
30120527 |
ctgagttccataaatctgacaagcaaccacatatgtgaatttcatcaaagcagtcccatactcgtggcctttaaataacaaacttactgaactgct |
30120432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 551 - 742
Target Start/End: Complemental strand, 30120359 - 30120168
Alignment:
| Q |
551 |
aacaagttcacgtgagccttctgtgatctctacttctgatgcagaatctagaaaagccaaaagcttgagggccttatagtagtacatcattcctctaaca |
650 |
Q |
| |
|
|||||| || |||||||||||| || || | ||||||||||||||| ||||| | ||| | |||||||||| |||||| ||||||||||||||||| |
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|
| T |
30120359 |
aacaagctcgcgtgagccttctcgaatgtccatttctgatgcagaatccagaaatgtcaacatcttgagggcccgatagtaatacatcattcctctaact |
30120260 |
T |
|
| Q |
651 |
gtccgcgatagtgtctggcctctataggatgcccatgacctcaattctcttagtttatctgtccatatctcacggtctttcatcatcccctc |
742 |
Q |
| |
|
|||||||||||||| ||||||| ||||| ||||| |||||| ||||| |||||||| ||||| | |||| |||||||||||||||||| |
|
|
| T |
30120259 |
gtccgcgatagtgtttggcctcggtaggaagcccacagcctcaaatctctaagtttatcagtccacagatcactgtctttcatcatcccctc |
30120168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 112 - 196
Target Start/End: Complemental strand, 34191701 - 34191617
Alignment:
| Q |
112 |
cctggttcatatcaatagtttgaattgcatccccgcgagtgaatatgatggcgtggttttgattttccggctttccttctccaag |
196 |
Q |
| |
|
|||| ||||||||||||||||||| |||||| || || |||||||| || || || ||||| || || ||||||||||| ||||| |
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|
| T |
34191701 |
cctgattcatatcaatagtttgaagtgcatcaccacgggtgaatattatcgcatgattttggttctcaggctttccttcaccaag |
34191617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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