View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2982_low_4 (Length: 528)

Name: NF2982_low_4
Description: NF2982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2982_low_4
NF2982_low_4
[»] chr7 (2 HSPs)
chr7 (133-456)||(36480601-36480925)
chr7 (19-60)||(36480994-36481035)
[»] chr8 (1 HSPs)
chr8 (453-514)||(4527273-4527334)
[»] chr3 (2 HSPs)
chr3 (453-514)||(50315390-50315451)
chr3 (453-514)||(43344468-43344529)
[»] chr1 (2 HSPs)
chr1 (453-514)||(9763354-9763415)
chr1 (453-514)||(27003414-27003475)
[»] chr4 (2 HSPs)
chr4 (328-404)||(22201444-22201521)
chr4 (419-456)||(22201512-22201549)
[»] scaffold0009 (2 HSPs)
scaffold0009 (134-175)||(10153-10195)
scaffold0009 (311-340)||(10316-10345)


Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 133 - 456
Target Start/End: Complemental strand, 36480925 - 36480601
Alignment:
Q  133 caaaatagtcatgaacttaatgaaaaattcacaaggatatatcaatcttatattggttcaatcttcaagccannnnnnnattgaatttttcacttacaac 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||       |||||||||||||||||||||    
T  36480925 caaaatagtcatgaacttaatgaaaaattcacaaggatatatcaatcttttattggttcaatcttcaagccatttttttattgaatttttcacttacaac 36480826  T
Q  233 catcgtgtatcatcattgaaggaatcattattttaccatgannnnnnncaatgtagattttcctaacagaatttgttgaagatactttatcaagaatgaa 332  Q
    |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36480825 catcgtgtatcatcattgaaggaatcattattttaccatgatttttttcaatgtagattttcctaacagaatttgttgaagatactttatcaagaatgaa 36480726  T
Q  333 ttttgatactgcagtgctaataattgaataatggaagtaaaattgttttgggatttgatattgaagatccaaac-nnnnnnnnggtagaagatccaacct 431  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||         |||||||||||||||||    
T  36480725 ttttgatactgcagtgctaataattgaataatggaagtaaaattattttgggatttgatattgaagatccaaactttttttttggtagaagatccaacct 36480626  T
Q  432 tttcttttgtacaagaagattcatc 456  Q
    |||||||||||||||||||||||||    
T  36480625 tttcttttgtacaagaagattcatc 36480601  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 36481035 - 36480994
Alignment:
Q  19 aatctggtcctagagtagctaattgtagtttctacgtgtgta 60  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  36481035 aatctggtcctagagtagctaattgtagtttctacgtgtgta 36480994  T

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Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 453 - 514
Target Start/End: Complemental strand, 4527334 - 4527273
Alignment:
Q  453 catctcaccaccgttttcaacagtaaagctcattgcagccgtccacttgttttttgattgtc 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4527334 catctcaccaccgttttcaacagtaaagctcattgcagccgtccacttgttttttgattgtc 4527273  T

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Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 453 - 514
Target Start/End: Original strand, 50315390 - 50315451
Alignment:
Q  453 catctcaccaccgttttcaacagtaaagctcattgcagccgtccacttgttttttgattgtc 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50315390 catctcaccaccgttttcaacagtaaagctcattgcagccgtccacttgttttttgattgtc 50315451  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 453 - 514
Target Start/End: Complemental strand, 43344529 - 43344468
Alignment:
Q  453 catctcaccaccgttttcaacagtaaagctcattgcagccgtccacttgttttttgattgtc 514  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  43344529 catctcaccaccgttttcaacggtaaagctcattgcagccgtccacttgttttttgattgtc 43344468  T

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Target: chr1 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 453 - 514
Target Start/End: Original strand, 9763354 - 9763415
Alignment:
Q  453 catctcaccaccgttttcaacagtaaagctcattgcagccgtccacttgttttttgattgtc 514  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  9763354 catctcaccaccgttttcaactgtaaagctcattgcagccgtccacttgttttttgattgtc 9763415  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 453 - 514
Target Start/End: Complemental strand, 27003475 - 27003414
Alignment:
Q  453 catctcaccaccgttttcaacagtaaagctcattgcagccgtccacttgttttttgattgtc 514  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  27003475 catctcaccaccgttttcaacagtaaagcttattgcagccgtccacttgttttttgattgtc 27003414  T

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Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 328 - 404
Target Start/End: Original strand, 22201444 - 22201521
Alignment:
Q  328 atgaattttgatactgcagtgctaataa-ttgaataatggaagtaaaattgttttgggatttgatattgaagatccaa 404  Q
    |||||||||||||||||| ||||| ||| ||||||||||||| |||||||||||||||||||||  ||||||||||||    
T  22201444 atgaattttgatactgcaatgctagtaacttgaataatggaaataaaattgttttgggatttgacgttgaagatccaa 22201521  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 419 - 456
Target Start/End: Original strand, 22201512 - 22201549
Alignment:
Q  419 gaagatccaaccttttcttttgtacaagaagattcatc 456  Q
    ||||||||||||||||||||||||||||||||||||||    
T  22201512 gaagatccaaccttttcttttgtacaagaagattcatc 22201549  T

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Target: scaffold0009 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 175
Target Start/End: Original strand, 10153 - 10195
Alignment:
Q  134 aaaatagtcatgaacttaatg-aaaaattcacaaggatatatc 175  Q
    |||| |||||||||||||||| |||||||||||||||||||||    
T  10153 aaaaaagtcatgaacttaatgaaaaaattcacaaggatatatc 10195  T

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Target: scaffold0009; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 340
Target Start/End: Original strand, 10316 - 10345
Alignment:
Q  311 aagatactttatcaagaatgaattttgata 340  Q
    ||||||||||||||||||||||||||||||    
T  10316 aagatactttatcaagaatgaattttgata 10345  T

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