View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2982_low_6 (Length: 437)

Name: NF2982_low_6
Description: NF2982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2982_low_6
NF2982_low_6
[»] chr7 (8 HSPs)
chr7 (13-420)||(34111529-34111946)
chr7 (271-357)||(2407349-2407435)
chr7 (271-418)||(41415663-41415813)
chr7 (18-65)||(5082494-5082541)
chr7 (271-356)||(40352662-40352747)
chr7 (18-65)||(48705631-48705678)
chr7 (244-298)||(41415844-41415898)
chr7 (13-61)||(47663233-47663281)
[»] chr5 (5 HSPs)
chr5 (238-397)||(5003485-5003646)
chr5 (273-418)||(16185211-16185359)
chr5 (13-65)||(32522761-32522813)
chr5 (37-65)||(28992952-28992980)
chr5 (37-65)||(28996232-28996260)
[»] chr8 (7 HSPs)
chr8 (245-418)||(18896424-18896600)
chr8 (272-410)||(30491731-30491869)
chr8 (366-418)||(4830305-4830358)
chr8 (251-298)||(4830388-4830435)
chr8 (19-65)||(24066952-24066998)
chr8 (21-65)||(7207210-7207254)
chr8 (37-65)||(8210169-8210197)
[»] chr3 (16 HSPs)
chr3 (331-418)||(29070071-29070159)
chr3 (255-418)||(6587924-6588085)
chr3 (248-418)||(52417867-52418040)
chr3 (19-65)||(15502698-15502744)
chr3 (270-384)||(49261976-49262089)
chr3 (18-65)||(15005806-15005853)
chr3 (246-357)||(30889070-30889180)
chr3 (330-405)||(21355677-21355751)
chr3 (27-65)||(21195341-21195379)
chr3 (271-356)||(11413561-11413645)
chr3 (13-60)||(36052035-36052082)
chr3 (331-410)||(36618833-36618912)
chr3 (369-418)||(3837278-3837328)
chr3 (13-65)||(21814185-21814237)
chr3 (82-118)||(32385615-32385651)
chr3 (272-356)||(36859738-36859822)
[»] chr2 (2 HSPs)
chr2 (272-405)||(43519363-43519496)
chr2 (13-65)||(10740458-10740510)
[»] chr4 (10 HSPs)
chr4 (259-385)||(4460178-4460306)
chr4 (13-118)||(35498828-35498932)
chr4 (13-118)||(45257613-45257717)
chr4 (271-418)||(4460415-4460564)
chr4 (79-118)||(55465472-55465511)
chr4 (246-405)||(29248011-29248173)
chr4 (255-357)||(39238797-39238900)
chr4 (18-65)||(45683967-45684014)
chr4 (244-314)||(4701696-4701766)
chr4 (21-65)||(4867831-4867875)
[»] chr1 (10 HSPs)
chr1 (18-65)||(46289645-46289692)
chr1 (243-346)||(35820067-35820171)
chr1 (18-65)||(51046703-51046750)
chr1 (18-118)||(894930-895029)
chr1 (21-65)||(11803427-11803471)
chr1 (13-65)||(12173186-12173238)
chr1 (18-65)||(32268009-32268056)
chr1 (79-118)||(39323464-39323503)
chr1 (258-324)||(35819795-35819861)
chr1 (22-58)||(35112158-35112194)
[»] scaffold0007 (2 HSPs)
scaffold0007 (245-420)||(201556-201732)
scaffold0007 (255-394)||(201314-201454)
[»] scaffold0169 (1 HSPs)
scaffold0169 (18-65)||(9070-9117)
[»] scaffold0267 (1 HSPs)
scaffold0267 (306-418)||(12784-12898)
[»] chr6 (4 HSPs)
chr6 (22-64)||(8053184-8053226)
chr6 (271-397)||(8382095-8382223)
chr6 (18-65)||(1947405-1947452)
chr6 (21-118)||(28541959-28542055)
[»] scaffold0734 (1 HSPs)
scaffold0734 (272-410)||(2033-2172)
[»] scaffold2122 (1 HSPs)
scaffold2122 (37-65)||(680-708)


Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 13 - 420
Target Start/End: Complemental strand, 34111946 - 34111529
Alignment:
Q  13 aatattagttttgcattggaaattacaattttttaacttttaaaaagttgaatccgtcannnnnnnaccacttcccaacacaatatttctattattgttc 112  Q
    |||| ||||||||||||| |||||||||||||| ||||||||||||||||||||| |||       ||||||||||||||||||||||||||||||||||    
T  34111946 aatagtagttttgcattgaaaattacaatttttaaacttttaaaaagttgaatccttcatttttt-accacttcccaacacaatatttctattattgttc 34111848  T
Q  113 tcttaa----------aaaggtaatgtttagcattttccttataaataatgtaactaatttaattgacggcatatctatttgtaacatttttatgcaata 202  Q
    ||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||    
T  34111847 tcttaaccaatgccctaaaggtaatgtttagcattttccttataaataatgtaactaatttaattgatgacatatctatttgaaacatttttatgcaata 34111748  T
Q  203 tctatttgttattaagacaataaatcaatgacatgaaattaattaggtttagttgcagttttggctttctaagtatcacaaccttgcgattttggctcag 302  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||    
T  34111747 tctattcgttattaagacaataaatcaatgacatgaaattaattaggtttagttgcagttttggctttctatgtatcacaaccttgcgattttggctgag 34111648  T
Q  303 tataaaaaacaatgacaaatcaatcatctaagtttacccctttttacacttttggttccacaccaattttgaccaagtcaatgaatatgtggcacacaca 402  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  34111647 tataaaaaacaatgacaaatcaatcatctaagtttacccctttttacacttttggtcccacaccaattttgaccaagtcaatgaatatgtggcacacaca 34111548  T
Q  403 tca-tttaagtgaggtgtc 420  Q
    ||| || ||||||||||||    
T  34111547 tcacttaaagtgaggtgtc 34111529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 271 - 357
Target Start/End: Original strand, 2407349 - 2407435
Alignment:
Q  271 ctaagtatcacaaccttgcgattttggctcagtataaaaaacaatgacaaatcaatcatctaagtttacccctttttacacttttgg 357  Q
    ||||||||||||| |||||||||||||  |  ||||||||||||| ||||||||  || ||||||||||||| |||| |||||||||    
T  2407349 ctaagtatcacaatcttgcgattttggtcccctataaaaaacaataacaaatcagccacctaagtttacccccttttgcacttttgg 2407435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 271 - 418
Target Start/End: Original strand, 41415663 - 41415813
Alignment:
Q  271 ctaagtatcacaaccttgcgattttggctcagtataaaaaacaatgacaaatcaatcatctaa-gtttacccctttttacacttttggttc-cacaccaa 368  Q
    ||||||||||||| |||||||||||||| |  ||||||||||||| |||||| |  |   ||| ||||||||| |||| |||||||||  | || | |||    
T  41415663 ctaagtatcacaatcttgcgattttggccccttataaaaaacaataacaaattagccccttaaagtttacccccttttgcacttttggcccacagatcaa 41415762  T
Q  369 ttttgaccaagtcaatgaatatgtggcacacacatcattt-aagtgaggtg 418  Q
    ||||||| ||||||||| ||| ||||||| |||||||||| ||||||||||    
T  41415763 ttttgactaagtcaatgcatacgtggcacccacatcatttaaagtgaggtg 41415813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 5082494 - 5082541
Alignment:
Q  18 tagttttgcattggaaattacaattttttaacttttaaaaagttgaat 65  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  5082494 tagttttgcattggaaattacaactttttgacttttaaaaagttgaat 5082541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 271 - 356
Target Start/End: Original strand, 40352662 - 40352747
Alignment:
Q  271 ctaagtatcacaaccttgcgattttggctcagtataaaaaacaatgacaaatcaatcatctaagtttacccctttttacacttttg 356  Q
    ||||||||||||| |||||||||||||     ||||||||||||| ||||||||  |   ||||||||||||||||||||||||||    
T  40352662 ctaagtatcacaatcttgcgattttggtcgcctataaaaaacaataacaaatcagccccataagtttacccctttttacacttttg 40352747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 48705631 - 48705678
Alignment:
Q  18 tagttttgcattggaaattacaattttttaacttttaaaaagttgaat 65  Q
    |||||||||||| |||||||||| ||||||||||||| ||||||||||    
T  48705631 tagttttgcattagaaattacaactttttaacttttagaaagttgaat 48705678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 298
Target Start/End: Complemental strand, 41415898 - 41415844
Alignment:
Q  244 attaggtttagttgcagttttggctttctaagtatcacaaccttgcgattttggc 298  Q
    ||||||| || ||||||||||||| |  |||||||||||| ||||||||||||||    
T  41415898 attaggtctaattgcagttttggcctcttaagtatcacaatcttgcgattttggc 41415844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 47663233 - 47663281
Alignment:
Q  13 aatattagttttgcattggaaattacaattttttaacttttaaaaagtt 61  Q
    |||| |||||||| |||| |||||||||||||| |||||||||| ||||    
T  47663233 aatagtagttttgtattgaaaattacaatttttaaacttttaaatagtt 47663281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 238 - 397
Target Start/End: Original strand, 5003485 - 5003646
Alignment:
Q  238 aaattaattaggtttagttgcagttttggctttctaagtatcacaaccttgcgattttggctcagtataaaaaacaatgacaaatcaatcatctaagttt 337  Q
    |||||||| | | ||| ||||||||||||   |||||||||||||| ||||||||||||   |  ||||||||||||| ||||||||| | |||||||||    
T  5003485 aaattaataaagcttaattgcagttttggtcctctaagtatcacaatcttgcgattttgatcccttataaaaaacaataacaaatcaaccctctaagttt 5003584  T
Q  338 acccctttttacacttttgg--ttccacaccaattttgaccaagtcaatgaatatgtggcac 397  Q
    | ||| |||| |||||||||  | ||  |||||||||||| | ||||||| |||||||||||    
T  5003585 atccccttttgcacttttggcctcccggaccaattttgactaggtcaatgcatatgtggcac 5003646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 273 - 418
Target Start/End: Original strand, 16185211 - 16185359
Alignment:
Q  273 aagtatcacaaccttgcgattttggctcagtataaaaaacaatgacaaatcaatcatctaagtttacccctttttacacttttggttc--cacaccaatt 370  Q
    ||||||||||| ||||||||||| || | |||||||||||||| ||||||||  |   ||||||||||   |||| ||||||| |  |  || |||||||    
T  16185211 aagtatcacaatcttgcgattttagccccgtataaaaaacaataacaaatcagccccttaagtttaccatcttttgcactttttgcccttcaaaccaatt 16185310  T
Q  371 ttgaccaagtcaatgaatatgtggcacacacatca-tttaagtgaggtg 418  Q
    ||||||||||| ||| ||||||||||||||||||| || ||||||||||    
T  16185311 ttgaccaagtcgatgcatatgtggcacacacatcacttaaagtgaggtg 16185359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 32522813 - 32522761
Alignment:
Q  13 aatattagttttgcattggaaattacaattttttaacttttaaaaagttgaat 65  Q
    |||| |||||||||||||||||| | |||||||||| ||||||||||||||||    
T  32522813 aatagtagttttgcattggaaataataattttttaaattttaaaaagttgaat 32522761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 65
Target Start/End: Original strand, 28992952 - 28992980
Alignment:
Q  37 acaattttttaacttttaaaaagttgaat 65  Q
    |||||||||||||||||||||||||||||    
T  28992952 acaattttttaacttttaaaaagttgaat 28992980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 65
Target Start/End: Original strand, 28996232 - 28996260
Alignment:
Q  37 acaattttttaacttttaaaaagttgaat 65  Q
    |||||||||||||||||||||||||||||    
T  28996232 acaattttttaacttttaaaaagttgaat 28996260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 245 - 418
Target Start/End: Original strand, 18896424 - 18896600
Alignment:
Q  245 ttaggtttagttgcagttttggctttctaagtatcacaaccttgcgattttggctcagtataaaaaacaatgacaaatcaatcatctaagtttacccctt 344  Q
    ||||| ||| ||||||||||||    ||||| ||||||| |||||||||||||  |  ||||||||||||| | ||||||  |  ||||||||| ||| |    
T  18896424 ttaggcttaattgcagttttggtcccctaagcatcacaatcttgcgattttggtcccctataaaaaacaataataaatcagccccctaagtttatcccct 18896523  T
Q  345 tttacacttttggttccaca--ccaattttgaccaagtcaatgaatatgtggcacacacatca-tttaagtgaggtg 418  Q
    ||| |||||||||| || ||  ||||||||||||||||||||| || |||||||| ||||||| || ||||||||||    
T  18896524 tttgcacttttggtccctcagaccaattttgaccaagtcaatgcatgtgtggcacccacatcacttaaagtgaggtg 18896600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 272 - 410
Target Start/End: Complemental strand, 30491869 - 30491731
Alignment:
Q  272 taagtatcacaaccttgcgattttggctcagtataaaaaacaatgacaaatcaatcatctaagtttacccctttttacacttttggttccacaccaattt 371  Q
    ||||||||| || |||||||||||| | |  ||||||||||||| ||||||||| | |||||||||| ||  |||| |||||||||  ||  |  |||||    
T  30491869 taagtatcataatcttgcgattttgaccctctataaaaaacaataacaaatcaaccctctaagtttatccacttttgcacttttggcccctaattaattt 30491770  T
Q  372 tgaccaagtcaatgaatatgtggcacacacatcatttaa 410  Q
    ||| |||||||||| |||  |||||| ||||||| ||||    
T  30491769 tgatcaagtcaatgcatacatggcacccacatcacttaa 30491731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 366 - 418
Target Start/End: Original strand, 4830305 - 4830358
Alignment:
Q  366 caattttgaccaagtcaatgaatatgtggcacacacatcattt-aagtgaggtg 418  Q
    |||||||||||||||||||| |||||| |||| |||||||||| ||||||||||    
T  4830305 caattttgaccaagtcaatgcatatgttgcacccacatcatttaaagtgaggtg 4830358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 298
Target Start/End: Complemental strand, 4830435 - 4830388
Alignment:
Q  251 ttagttgcagttttggctttctaagtatcacaaccttgcgattttggc 298  Q
    ||||||| |||||||||  |||||||||||||| ||||||||||||||    
T  4830435 ttagttgtagttttggccctctaagtatcacaatcttgcgattttggc 4830388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 24066952 - 24066998
Alignment:
Q  19 agttttgcattggaaattacaattttttaacttttaaaaagttgaat 65  Q
    |||||||||||| ||||||||| ||||||||||||| || |||||||    
T  24066952 agttttgcattgaaaattacaactttttaacttttagaaggttgaat 24066998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 7207210 - 7207254
Alignment:
Q  21 ttttgcattggaaattacaattttttaacttttaaaaagttgaat 65  Q
    ||||||||||| |||||||| ||||||||||||| ||| ||||||    
T  7207210 ttttgcattgggaattacaactttttaacttttagaaatttgaat 7207254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 65
Target Start/End: Original strand, 8210169 - 8210197
Alignment:
Q  37 acaattttttaacttttaaaaagttgaat 65  Q
    |||||||||||||||||||||||||||||    
T  8210169 acaattttttaacttttaaaaagttgaat 8210197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 331 - 418
Target Start/End: Complemental strand, 29070159 - 29070071
Alignment:
Q  331 taagtttacccctttttacacttttggttccacaccaattttgaccaagtcaatgaatatgtggcacacacatca-tttaagtgaggtg 418  Q
    |||||||||||| |||| |||||||||| ||| ||||||||| |||||||||||| ||||||||||| ||||||| || ||||||||||    
T  29070159 taagtttacccccttttgcacttttggtcccagaccaattttaaccaagtcaatgcatatgtggcacccacatcacttaaagtgaggtg 29070071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 255 - 418
Target Start/End: Original strand, 6587924 - 6588085
Alignment:
Q  255 ttgcagttttggctttctaagtatcacaaccttgcgattttggctcagtataaaaaacaatgacaaatcaatcatctaagtttacccctttttacacttt 354  Q
    |||||||||| ||  |||||||||||||| ||||| ||||| || |  |||||||| |||| ||||||||  |   |||||||||||| |||| ||||||    
T  6587924 ttgcagtttttgccctctaagtatcacaatcttgcaattttcgccccctataaaaa-caataacaaatcagccca-taagtttacccccttttgcacttt 6588021  T
Q  355 tggttccacaccaattttgaccaagtcaatgaatatgtggcacacacatcatttaagtgaggtg 418  Q
    |||  | | ||||||||||||||||| |||| |||  |||||| ||||||| ||||||||||||    
T  6588022 tggcccaagaccaattttgaccaagttaatgcatacatggcacccacatcacttaagtgaggtg 6588085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 248 - 418
Target Start/End: Original strand, 52417867 - 52418040
Alignment:
Q  248 ggtttagttgcagttttggctttctaagtatcacaaccttgcgattttgg-ctcagtataaaaaacaatgacaaatcaatcatctaagtttacccctttt 346  Q
    |||||| ||||||||||| | | |||||||||||||||||| |||||||| |||   |||||||||||| ||||||||  |   ||||||| |||| |||    
T  52417867 ggtttaattgcagttttgccctcctaagtatcacaaccttgtgattttggtctcca-ataaaaaacaataacaaatcagccccgtaagttttcccccttt 52417965  T
Q  347 tacacttttgg--ttccacaccaattttgaccaagtcaatgaatatgtggcacacacatca-tttaagtgaggtg 418  Q
    | |||||||||  | ||| |||||||||||| |||| | || ||||||||||| ||||||| || ||||||||||    
T  52417966 tgcacttttggcctcccaaaccaattttgactaagttagtgcatatgtggcactcacatcacttaaagtgaggtg 52418040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 15502744 - 15502698
Alignment:
Q  19 agttttgcattggaaattacaattttttaacttttaaaaagttgaat 65  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||    
T  15502744 agttttgtattggaaattacaattttttaacttttaaaaagttgaat 15502698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 270 - 384
Target Start/End: Original strand, 49261976 - 49262089
Alignment:
Q  270 tctaagtatcacaaccttgcgattttggctcagtataaaaaacaatgacaaatcaatcatctaagtttacccctttttacacttttggttccacaccaat 369  Q
    |||||||||||||| |||||||||||||| |  ||||||||  ||| | ||||||| |  ||||||||||||  ||||||||||||| | ||| ||||||    
T  49261976 tctaagtatcacaatcttgcgattttggccccctataaaaat-aataataaatcaacctcctaagtttaccctcttttacacttttgatcccagaccaat 49262074  T
Q  370 tttgaccaagtcaat 384  Q
    |||||| ||||||||    
T  49262075 tttgactaagtcaat 49262089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 15005806 - 15005853
Alignment:
Q  18 tagttttgcattggaaattacaattttttaacttttaaaaagttgaat 65  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  15005806 tagttttgcattgaaaattacaattttttaacttttacaaagttgaat 15005853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 246 - 357
Target Start/End: Original strand, 30889070 - 30889180
Alignment:
Q  246 taggtttagttgcagttttggctttctaagtatcacaaccttgcgattttggctcagtataaaaaacaatgacaaatcaatcatctaagtttaccccttt 345  Q
    |||||||| ||  ||||||||||| |||||| |||||  |||||||||||||| |  ||||||||||||| ||||||| | | ||||||||||| || ||    
T  30889070 taggtttaattatagttttggcttcctaagtgtcacagtcttgcgattttggccccctataaaaaacaataacaaatc-agcctctaagtttactccatt 30889168  T
Q  346 ttacacttttgg 357  Q
    || |||||||||    
T  30889169 ttgcacttttgg 30889180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 330 - 405
Target Start/End: Complemental strand, 21355751 - 21355677
Alignment:
Q  330 ctaagtttacccctttttacacttttggttccacaccaattttgaccaagtcaatgaatatgtggcacacacatca 405  Q
    ||||||||||| | |||| |||||| || |||| ||||||||||| |||||||||| ||||||||||| |||||||    
T  21355751 ctaagtttacctccttttgcacttt-ggctccagaccaattttgatcaagtcaatgcatatgtggcacccacatca 21355677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 21195379 - 21195341
Alignment:
Q  27 attggaaattacaattttttaacttttaaaaagttgaat 65  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  21195379 attggaaataacaattttttaacttttaaaaagttgaat 21195341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 271 - 356
Target Start/End: Complemental strand, 11413645 - 11413561
Alignment:
Q  271 ctaagtatcacaaccttgcgattttggctcagtataaaaaacaatgacaaatcaatcatctaagtttacccctttttacacttttg 356  Q
    ||||||||||||| |||||||||| | | |  ||||||||| ||| ||||||||| | |||||||||||| |||||| ||||||||    
T  11413645 ctaagtatcacaatcttgcgattt-gaccccctataaaaaataataacaaatcaaccctctaagtttacctctttttgcacttttg 11413561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 36052082 - 36052035
Alignment:
Q  13 aatattagttttgcattggaaattacaattttttaacttttaaaaagt 60  Q
    |||| ||||||||||||| |||| |||||| |||||||||||||||||    
T  36052082 aatagtagttttgcattgaaaataacaattgtttaacttttaaaaagt 36052035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 410
Target Start/End: Complemental strand, 36618912 - 36618833
Alignment:
Q  331 taagtttacccctttttacacttttggttccacaccaattttgaccaagtcaatgaatatgtggcacacacatcatttaa 410  Q
    |||||||||||| | || |||||||||  ||| |||||||||||||||||||||| |||  || ||| ||||||| ||||    
T  36618912 taagtttaccccctgttgcacttttggccccagaccaattttgaccaagtcaatgcatacatgacacccacatcacttaa 36618833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 418
Target Start/End: Complemental strand, 3837328 - 3837278
Alignment:
Q  369 ttttgaccaagtcaatgaatatgtggcacacacatca-tttaagtgaggtg 418  Q
    ||||||||||||||||| ||||||||||| ||||||| || ||||||||||    
T  3837328 ttttgaccaagtcaatgcatatgtggcacccacatcacttaaagtgaggtg 3837278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 21814185 - 21814237
Alignment:
Q  13 aatattagttttgcattggaaattacaattttttaacttttaaaaagttgaat 65  Q
    |||| |||||||||||||||||||| || ||||| ||||||| ||| ||||||    
T  21814185 aatactagttttgcattggaaattataactttttgacttttagaaaattgaat 21814237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 118
Target Start/End: Complemental strand, 32385651 - 32385615
Alignment:
Q  82 acttcccaacacaatatttctattattgttctcttaa 118  Q
    |||| ||||||||||||| ||||||||||||||||||    
T  32385651 actttccaacacaatattactattattgttctcttaa 32385615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 356
Target Start/End: Complemental strand, 36859822 - 36859738
Alignment:
Q  272 taagtatcacaaccttgcgattttggctcagtataaaaaacaatgacaaatcaatcatctaagtttacccctttttacacttttg 356  Q
    |||||||||| | |||||||||||||| |  ||||||||||||| || |||||  |   |||||||||||  |||||||||||||    
T  36859822 taagtatcacgaacttgcgattttggccctctataaaaaacaataactaatcagccccataagtttaccctcttttacacttttg 36859738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 272 - 405
Target Start/End: Complemental strand, 43519496 - 43519363
Alignment:
Q  272 taagtatcacaaccttgcgattttggctcagtataaaaaacaatgacaaatcaatcatctaagtttacccctttttacacttttggttcc-acaccaatt 370  Q
    |||||||||||| ||||||| |||| |||  || ||||||||| |||||||||  |  ||||||||||| | |||| |||||||||| || | |||||||    
T  43519496 taagtatcacaatcttgcgactttgactctata-aaaaaacaacgacaaatcagccccctaagtttaccaccttttgcacttttggtccccagaccaatt 43519398  T
Q  371 ttgaccaagtcaatgaatatgtggcacacacatca 405  Q
    ||||||||||||||| ||| ||||||| |||||||    
T  43519397 ttgaccaagtcaatgcatacgtggcacccacatca 43519363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 10740510 - 10740458
Alignment:
Q  13 aatattagttttgcattggaaattacaattttttaacttttaaaaagttgaat 65  Q
    |||| ||||||| ||||| | |||||||||||| |||||||||||| ||||||    
T  10740510 aatagtagttttacattgaagattacaatttttaaacttttaaaaaattgaat 10740458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 259 - 385
Target Start/End: Original strand, 4460178 - 4460306
Alignment:
Q  259 agttttggctttctaagtatcacaaccttgcgattttggctcagtataaaaaacaatgacaaatcaatcatctaagtttacccctttttacacttttgg- 357  Q
    ||||||||| | ||||||||||||| |||| ||||||| | |  ||||||||| ||| |||||||| ||  ||||||||||||| |||| |||||||||     
T  4460178 agttttggcctcctaagtatcacaatcttgtgattttgaccccctataaaaaataataacaaatcagtcccctaagtttacccccttttgcacttttggc 4460277  T
Q  358 -ttccacaccaattttgaccaagtcaatg 385  Q
     | ||| |||||||||||| | |||||||    
T  4460278 ctcccagaccaattttgactaggtcaatg 4460306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 118
Target Start/End: Complemental strand, 35498932 - 35498828
Alignment:
Q  13 aatattagttttgcattggaaattacaattttttaacttttaaaaagttgaatccgtcannnnnnnaccacttcccaacacaatatttctattattgttc 112  Q
    |||| ||||||| ||||| ||| |||||||||| ||| ||||||||||||||||| |||       |||  ||||||||||||||||| |||||||||||    
T  35498932 aataatagttttacattgaaaactacaatttttaaacatttaaaaagttgaatccatcacttttt-acctattcccaacacaatatttttattattgttc 35498834  T
Q  113 tcttaa 118  Q
    ||||||    
T  35498833 tcttaa 35498828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 118
Target Start/End: Complemental strand, 45257717 - 45257613
Alignment:
Q  13 aatattagttttgcattggaaattacaattttttaacttttaaaaagttgaatccgtcannnnnnnaccacttcccaacacaatatttctattattgttc 112  Q
    |||| ||| |||||||||||||| | ||||||||| ||||||||||||||||| |  ||       | |||||||||||| |||||||||||| ||||||    
T  45257717 aatagtagctttgcattggaaataataattttttagcttttaaaaagttgaattcaccacttttcaa-cacttcccaacaaaatatttctatttttgttc 45257619  T
Q  113 tcttaa 118  Q
    ||||||    
T  45257618 tcttaa 45257613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 271 - 418
Target Start/End: Complemental strand, 4460564 - 4460415
Alignment:
Q  271 ctaagtatcacaaccttgcgattttggctcagtataaaaaacaatgacaaatcaatcatctaagtttacccctttttacacttttgg--ttccacaccaa 368  Q
    ||||||||||||| |||||||||||||  |  |||||||| |||| ||||||||  |   ||| |||| ||||||||  ||||||||  ||||  |||||    
T  4460564 ctaagtatcacaatcttgcgattttggtcccctataaaaa-caataacaaatcagccccttaaatttaaccctttttggacttttggccttccggaccaa 4460466  T
Q  369 ttttgaccaagtcaatgaatatgtggcacacacatca-tttaagtgaggtg 418  Q
    ||||||||||||||||| ||| ||| ||| ||||||| || ||||||||||    
T  4460465 ttttgaccaagtcaatgcatacgtgacacccacatcacttaaagtgaggtg 4460415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 79 - 118
Target Start/End: Complemental strand, 55465511 - 55465472
Alignment:
Q  79 accacttcccaacacaatatttctattattgttctcttaa 118  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  55465511 accacttcccaacacaatatttctattattgatctcttaa 55465472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 405
Target Start/End: Original strand, 29248011 - 29248173
Alignment:
Q  246 taggtttagttgcagttttggctttctaagtatcacaaccttgcgattttggctcagtataaaaaacaatgacaaatcaatcatct-aagtttacccctt 344  Q
    |||||||| |||||||||||||  |||||||||||||| |||   ||||||   |  ||||||||| | | ||||||||  | ||| ||||||||  | |    
T  29248011 taggtttaattgcagttttggccctctaagtatcacaatcttctaattttgatcccctataaaaaatattaacaaatcagccctcttaagtttacatcat 29248110  T
Q  345 tttacacttttggttccac--accaattttgaccaagtcaatgaatatgtggcacacacatca 405  Q
    ||| |||||||| |||  |  ||||||||||||||||| |||| ||||||||||| |||||||    
T  29248111 tttgcacttttgattctccgaaccaattttgaccaagttaatgcatatgtggcacccacatca 29248173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 357
Target Start/End: Original strand, 39238797 - 39238900
Alignment:
Q  255 ttgcagttttggctttctaagtatcacaaccttgcgattttggctcagtataaa-aaacaatgacaaatcaatcatctaagtttacccctttttacactt 353  Q
    ||||||||||| || |||||||||||||| ||||||||||||   |  |||||| ||||||| |||||| | ||  |||||||||| || ||||| ||||    
T  39238797 ttgcagttttgactctctaagtatcacaatcttgcgattttgatcccttataaataaacaataacaaataagtcccctaagtttactcccttttatactt 39238896  T
Q  354 ttgg 357  Q
    ||||    
T  39238897 ttgg 39238900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 45683967 - 45684014
Alignment:
Q  18 tagttttgcattggaaattacaattttttaacttttaaaaagttgaat 65  Q
    |||||||||||||| |||||||| ||||||||||||| ||| ||||||    
T  45683967 tagttttgcattgggaattacaactttttaacttttataaatttgaat 45684014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 314
Target Start/End: Original strand, 4701696 - 4701766
Alignment:
Q  244 attaggtttagttgcagttttggctttctaagtatcacaaccttgcgattttggctcagtataaaaaacaa 314  Q
    |||||| ||| |||||||||||   ||||||||||||||| ||| |||||||||| |  ||||||||||||    
T  4701696 attaggcttaattgcagttttgatcttctaagtatcacaatcttacgattttggccccatataaaaaacaa 4701766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 4867875 - 4867831
Alignment:
Q  21 ttttgcattggaaattacaattttttaacttttaaaaagttgaat 65  Q
    ||||| |||||||||||||| ||||| ||||||||||| ||||||    
T  4867875 ttttgtattggaaattacaactttttgacttttaaaaatttgaat 4867831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 46289692 - 46289645
Alignment:
Q  18 tagttttgcattggaaattacaattttttaacttttaaaaagttgaat 65  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  46289692 tagttttgcattggaaattacaactttttaacttttaaaaagtcgaat 46289645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 346
Target Start/End: Complemental strand, 35820171 - 35820067
Alignment:
Q  243 aattaggtttagttgcagttttggctttctaagtatcacaaccttgcgattttggctcagtat-aaaaaacaatgacaaatcaatcatctaagtttaccc 341  Q
    ||||||| ||| |||||||||||||   ||||||||||||| |||||||||||||| |  ||| |||||| ||| ||||||||  |  ||||||||||||    
T  35820171 aattaggcttaattgcagttttggccccctaagtatcacaatcttgcgattttggccccctataaaaaaataataacaaatcagccccctaagtttaccc 35820072  T
Q  342 ctttt 346  Q
    |||||    
T  35820071 ctttt 35820067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 51046750 - 51046703
Alignment:
Q  18 tagttttgcattggaaattacaattttttaacttttaaaaagttgaat 65  Q
    |||||||||||||||||| |||| ||||| ||||||||||||||||||    
T  51046750 tagttttgcattggaaatgacaactttttgacttttaaaaagttgaat 51046703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 894930 - 895029
Alignment:
Q  18 tagttttgcattggaaattacaattttttaacttttaaaaagttgaatccgtcannnnnnnaccacttcccaacacaatatttctattattgttctctta 117  Q
    ||||||| ||||||||| |||||||||  ||||||||||||||||||| | |||       || |||| |||||| ||||||||||||| ||||||||||    
T  894930 tagttttacattggaaactacaattttcaaacttttaaaaagttgaattcatca-cttttcacaactttccaacataatatttctattactgttctctta 895028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 11803471 - 11803427
Alignment:
Q  21 ttttgcattggaaattacaattttttaacttttaaaaagttgaat 65  Q
    ||||| ||||||||| ||||| |||||||||||||||||||||||    
T  11803471 ttttgtattggaaataacaatgttttaacttttaaaaagttgaat 11803427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 12173238 - 12173186
Alignment:
Q  13 aatattagttttgcattggaaattacaattttttaacttttaaaaagttgaat 65  Q
    |||| |||||||||||||||||||| || ||||| ||||||| ||||||||||    
T  12173238 aatagtagttttgcattggaaattataactttttgacttttacaaagttgaat 12173186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 32268009 - 32268056
Alignment:
Q  18 tagttttgcattggaaattacaattttttaacttttaaaaagttgaat 65  Q
    ||||||| | ||||||||||||||||||| ||||||| ||||||||||    
T  32268009 tagttttacgttggaaattacaattttttgacttttagaaagttgaat 32268056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 118
Target Start/End: Original strand, 39323464 - 39323503
Alignment:
Q  79 accacttcccaacacaatatttctattattgttctcttaa 118  Q
    ||||||| |||||||||||||||||||||||||| |||||    
T  39323464 accactttccaacacaatatttctattattgttcacttaa 39323503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 35819795 - 35819861
Alignment:
Q  258 cagttttggctttctaagtatcacaaccttgcgattttggctcagtataaaaaacaatgacaaatca 324  Q
    ||||||||||   ||||||||||||| |||||||||||| | |  ||||||||||||| ||||||||    
T  35819795 cagttttggccccctaagtatcacaatcttgcgattttgccaccctataaaaaacaataacaaatca 35819861  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 35112194 - 35112158
Alignment:
Q  22 tttgcattggaaattacaattttttaacttttaaaaa 58  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  35112194 tttgcattagaaataacaattttttaacttttaaaaa 35112158  T

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Target: scaffold0007 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 245 - 420
Target Start/End: Complemental strand, 201732 - 201556
Alignment:
Q  245 ttaggtttagttgcagttttggctttctaagtatcacaaccttgcgattttggctcagtataaaaaacaatgacaaatcaatcatctaagtttacccctt 344  Q
    ||||||||| |||||||||||||   ||||||||||||| |||  |||||| || |  ||| ||||||||| ||||| ||| |  ||| ||||||||| |    
T  201732 ttaggtttaattgcagttttggccccctaagtatcacaatcttatgattttagccccctat-aaaaacaataacaaaccaaccccctatgtttaccccct 201634  T
Q  345 tttacacttttgg-ttccacaccaattttgaccaagtcaatgaatatgtggcacacacatca-tttaagtgaggtgtc 420  Q
    ||| |||||||||   ||| ||||||||||| |||| ||||| ||| | ||||| ||||||| || ||||||||||||    
T  201633 tttgcacttttggcccccagaccaattttgatcaagccaatgcatacgcggcacccacatcacttaaagtgaggtgtc 201556  T

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Target: scaffold0007; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 394
Target Start/End: Original strand, 201314 - 201454
Alignment:
Q  255 ttgcagttttggctttctaagtatcacaaccttgcgattttggctcagtataaaaaacaatgacaaatcaatcatctaagtttacccctttttacacttt 354  Q
    ||||||||||| |   ||||||||||||| |||||||||||| | |  | ||||||||||| | ||||||  |  |||||||||||||||||| ||||||    
T  201314 ttgcagttttgaccccctaagtatcacaatcttgcgattttgaccctctgtaaaaaacaataataaatcagccccctaagtttaccccttttt-cacttt 201412  T
Q  355 tggt--tccacaccaattttgaccaagtcaatgaatatgtgg 394  Q
    || |   ||| |||||||||||||||||| ||| ||| ||||    
T  201413 tgatcccccagaccaattttgaccaagtcgatgcataggtgg 201454  T

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Target: scaffold0169 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 9117 - 9070
Alignment:
Q  18 tagttttgcattggaaattacaattttttaacttttaaaaagttgaat 65  Q
    ||||||||||||| || |||||||||||| ||||||||||||||||||    
T  9117 tagttttgcattgaaagttacaattttttgacttttaaaaagttgaat 9070  T

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Target: scaffold0267 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 306 - 418
Target Start/End: Complemental strand, 12898 - 12784
Alignment:
Q  306 aaaaaacaatgacaaatcaatcatctaagtttacccctttttacacttttggt-tccacaccaattttgaccaagtcaatgaatatgtggcacacacatc 404  Q
    |||||||||| ||||||||  |  |||| |||||||| |||| |||||||||  | || | || ||||||||||||||||| ||||||||||| ||||||    
T  12898 aaaaaacaataacaaatcagccccctaaatttacccccttttgcacttttggcctacagatcagttttgaccaagtcaatgtatatgtggcacccacatc 12799  T
Q  405 a-tttaagtgaggtg 418  Q
    | || ||||||||||    
T  12798 acttaaagtgaggtg 12784  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 8053184 - 8053226
Alignment:
Q  22 tttgcattggaaattacaattttttaacttttaaaaagttgaa 64  Q
    |||| ||||||||| ||||||||||||||||||||||||||||    
T  8053184 tttgtattggaaataacaattttttaacttttaaaaagttgaa 8053226  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 271 - 397
Target Start/End: Original strand, 8382095 - 8382223
Alignment:
Q  271 ctaagtatcacaaccttgcgattttggctcagtataaaaaacaatgacaaatcaatcatctaagtttacccctttttacacttttggttccac--accaa 368  Q
    ||||||||||||| ||||| ||||||   |  ||||||||||||| |||||||| ||  |||||||||| || |||| |||||||||| || |  |||||    
T  8382095 ctaagtatcacaatcttgcaattttgatcccttataaaaaacaataacaaatcagtctgctaagtttactcccttttgcacttttggtcccccggaccaa 8382194  T
Q  369 ttttgaccaagtcaatgaatatgtggcac 397  Q
    |||||||   ||||||| ||| |||||||    
T  8382195 ttttgactgggtcaatgcataagtggcac 8382223  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 1947405 - 1947452
Alignment:
Q  18 tagttttgcattggaaattacaattttttaacttttaaaaagttgaat 65  Q
    |||||||| |||||||||||||| ||||| ||||||| ||||||||||    
T  1947405 tagttttgtattggaaattacaactttttgacttttagaaagttgaat 1947452  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 28541959 - 28542055
Alignment:
Q  21 ttttgcattggaaattacaattttttaacttttaaaaagttgaatccgtcannnnnnnaccacttcccaacacaatatttctattattgttctcttaa 118  Q
    |||| ||||| ||| |||||||||  ||||||||||||||||||| | |||       || |||| |||||||||||||| |||||||||||||||||    
T  28541959 ttttacattgaaaactacaattttcaaacttttaaaaagttgaattcatcacttttt-actactttccaacacaatatttttattattgttctcttaa 28542055  T

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Target: scaffold0734 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0734
Description:

Target: scaffold0734; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 410
Target Start/End: Complemental strand, 2172 - 2033
Alignment:
Q  272 taagtatcacaaccttgcgattttggctcagtataaaaaacaatgacaaatcaatcatctaag-tttacccctttttacacttttggt-tccacaccaat 369  Q
    |||||||||||| |||  |||||||||||  ||||||||||||| ||||||| | | ||| || ||||||||| |||| |  ||||||  ||| ||||||    
T  2172 taagtatcacaatcttatgattttggctctttataaaaaacaataacaaatc-agcttcttagatttacccctctttatatctttggtccccaaaccaat 2074  T
Q  370 tttgaccaagtcaatgaatatgtggcacacacatcatttaa 410  Q
    |||||||||||||| | ||| ||| ||| || |||||||||    
T  2073 tttgaccaagtcaaagcatacgtgacacccatatcatttaa 2033  T

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Target: scaffold2122 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold2122
Description:

Target: scaffold2122; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 65
Target Start/End: Complemental strand, 708 - 680
Alignment:
Q  37 acaattttttaacttttaaaaagttgaat 65  Q
    |||||||||||||||||||||||||||||    
T  708 acaattttttaacttttaaaaagttgaat 680  T

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