View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2982_low_8 (Length: 398)
Name: NF2982_low_8
Description: NF2982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2982_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 19 - 388
Target Start/End: Complemental strand, 28258044 - 28257675
Alignment:
| Q |
19 |
tattaaatgttaaaaatatttttagtaatattatgaaatgaaaaaatggtgctaaattaatttatccggaaaattgaagtatataccttaggaacaccag |
118 |
Q |
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| T |
28258044 |
tattaaatgttaaaaaaattattagtaatattatgaaatgaaaaaatggtgctaaattaatttatccggaaaattgaagtatataccttaggaacaccag |
28257945 |
T |
|
| Q |
119 |
gataaacattaggaccatctggcctattgattataacaccttgccttggattttctttatggtaggcaatatcatcatacatgaaaacaattatgttttc |
218 |
Q |
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| T |
28257944 |
gataaacattaggaccatctggcctattgattataacaccttgccttggattttctttatggtaggcaatatcatcatacatgaaaacaattatgttttc |
28257845 |
T |
|
| Q |
219 |
atcttgaaggccaccattttttaatacatggtaggcatgacaaatatttgcttggtgcctataatttgggtaatcttttgaaccagcaactagtaatgcc |
318 |
Q |
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| T |
28257844 |
atcttgaaggccaccattttttaatacatggtaggcatgacaaatattggcttggtgcctataatttgggtaatcttttgaaccagcaactagtaatgcc |
28257745 |
T |
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| Q |
319 |
cattttttccctactacttcaaaattaccttgctcattatgttcatgaaccataggtcgaataccctttg |
388 |
Q |
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| T |
28257744 |
cattttttccttactacttcaaaattaccttgctcattatgttcatcaaccataggtcgaataccctttg |
28257675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 99 - 379
Target Start/End: Complemental strand, 29927265 - 29926985
Alignment:
| Q |
99 |
atataccttaggaacaccaggataaacattaggaccatctggcctattgattataacaccttgccttggattttctttatggtaggcaatatcatcatac |
198 |
Q |
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| T |
29927265 |
atataccttaggaacaccaggataaacattaggaccatccggtctattgattataacaccaggtcttggattttcattatggtaggcaatatcatcatac |
29927166 |
T |
|
| Q |
199 |
atgaaaacaattatgttttcatcttgaaggccaccattttttaatacatggtaggcatgacaaatatttgcttggtgcctataatttgggtaatcttttg |
298 |
Q |
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||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||| | ||||||||||||||| | |||| |||||| |
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| T |
29927165 |
atgaaaacaattatgttttcatcttgaagaccaccactttttaatatatggtaggcatgacaaatattagattggtgcctataattggagtaaccttttg |
29927066 |
T |
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| Q |
299 |
aaccagcaactagtaatgcccattttttccctactacttcaaaattaccttgctcattatgttcatgaaccataggtcgaa |
379 |
Q |
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|||||||||| ||||| |||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||| |||| |
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| T |
29927065 |
aaccagcaaccagtaaagcccattttttccctactacttcaaaattaccttgctcgtcatgtttatgaaccataggacgaa |
29926985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 181 - 330
Target Start/End: Complemental strand, 11323492 - 11323343
Alignment:
| Q |
181 |
taggcaatatcatcatacatgaaaacaattatgttttcatcttgaaggccaccattttttaatacatggtaggcatgacaaatatttgcttggtgcctat |
280 |
Q |
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|||||||| ||||| ||||||||||||| ||||||||||||| ||| || || |||||||||| || |||||||| ||||||| ||||||||||||| |
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| T |
11323492 |
taggcaatgtcatcgtacatgaaaacaacgatgttttcatctttaagaccgcctttttttaatatttgataggcatggcaaatatcggcttggtgcctat |
11323393 |
T |
|
| Q |
281 |
aatttgggtaatcttttgaaccagcaactagtaatgcccattttttccct |
330 |
Q |
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|||| |||| | || || || |||||||| || |||||||| |||||| |
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| T |
11323392 |
aattcacgtaaccattcgatcctgcaactagaaaggcccatttcttccct |
11323343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 184 - 223
Target Start/End: Complemental strand, 4493595 - 4493556
Alignment:
| Q |
184 |
gcaatatcatcatacatgaaaacaattatgttttcatctt |
223 |
Q |
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|||||||||||||||||||||||||| |||||||| |||| |
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| T |
4493595 |
gcaatatcatcatacatgaaaacaataatgttttcttctt |
4493556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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