View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2982_low_9 (Length: 324)

Name: NF2982_low_9
Description: NF2982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2982_low_9
NF2982_low_9
[»] chr8 (2 HSPs)
chr8 (30-279)||(11480982-11481231)
chr8 (39-77)||(9766107-9766145)
[»] chr1 (5 HSPs)
chr1 (30-77)||(19884736-19884783)
chr1 (34-77)||(2192120-2192163)
chr1 (34-77)||(25294258-25294301)
chr1 (30-77)||(38264651-38264698)
chr1 (33-77)||(17563116-17563160)
[»] chr6 (2 HSPs)
chr6 (34-77)||(34435133-34435176)
chr6 (34-77)||(8576501-8576544)
[»] chr4 (2 HSPs)
chr4 (34-77)||(41039084-41039127)
chr4 (30-76)||(51356934-51356980)
[»] chr3 (4 HSPs)
chr3 (30-79)||(21287864-21287913)
chr3 (34-77)||(4127751-4127794)
chr3 (30-77)||(13825659-13825706)
chr3 (34-78)||(25875041-25875085)
[»] chr5 (5 HSPs)
chr5 (34-78)||(39800738-39800782)
chr5 (34-78)||(40056733-40056777)
chr5 (34-77)||(23428985-23429028)
chr5 (36-78)||(33743048-33743090)
chr5 (34-75)||(39207432-39207473)
[»] scaffold0115 (1 HSPs)
scaffold0115 (34-77)||(21815-21858)
[»] chr2 (2 HSPs)
chr2 (30-77)||(13807323-13807370)
chr2 (34-78)||(42625348-42625392)


Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 30 - 279
Target Start/End: Complemental strand, 11481231 - 11480982
Alignment:
Q  30 cacagatatcacattatccgcatccatgaatttccatttacatccctacaaatgagtagaccaaatgaagttttggtcaatgcttgagtataaactacca 129  Q
    |||| |||||||| |||||||||| ||| || ||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  11481231 cacaaatatcacactatccgcatctatggatatccatttacatccatacaaatgagtagatcaaatgaagttttggtcaatggttgagtataaactacca 11481132  T
Q  130 acatcaaaatttcagacttaaatctaagtcatattcactcttagcagtaaatatttagtctcatcgaaattttgccaacagctagagattaaaggatgaa 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  11481131 acatcaaaatttcagacttaaatctaagtcatattcactcttagcagtaaatatttagtctcatcgaaattttgccaacaactagagattaaaggatgaa 11481032  T
Q  230 ttttattctataatcatccaaaagcccattgattttccatacaaatttct 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11481031 ttttattctataatcatccaaaagcccattgattttccatacaaatttct 11480982  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 77
Target Start/End: Original strand, 9766107 - 9766145
Alignment:
Q  39 cacattatccgcatccatgaatttccatttacatcccta 77  Q
    |||| ||||||||||||||||| ||||||||||||||||    
T  9766107 cacactatccgcatccatgaatatccatttacatcccta 9766145  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 19884736 - 19884783
Alignment:
Q  30 cacagatatcacattatccgcatccatgaatttccatttacatcccta 77  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  19884736 cacagatatcacactatccgcatccatgaatatccatttacatcccta 19884783  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 77
Target Start/End: Original strand, 2192120 - 2192163
Alignment:
Q  34 gatatcacattatccgcatccatgaatttccatttacatcccta 77  Q
    |||||||||||||||||||||||| |  ||||||||||||||||    
T  2192120 gatatcacattatccgcatccatggacatccatttacatcccta 2192163  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 77
Target Start/End: Original strand, 25294258 - 25294301
Alignment:
Q  34 gatatcacattatccgcatccatgaatttccatttacatcccta 77  Q
    ||||||||| |||||||||||||| || ||||||||||||||||    
T  25294258 gatatcacactatccgcatccatggatatccatttacatcccta 25294301  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 38264651 - 38264698
Alignment:
Q  30 cacagatatcacattatccgcatccatgaatttccatttacatcccta 77  Q
    |||| |||||||| |||||| |||||||||| ||||||||||||||||    
T  38264651 cacatatatcacagtatccgtatccatgaatatccatttacatcccta 38264698  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 17563116 - 17563160
Alignment:
Q  33 agatatcacattatccgcatccatgaatttccatttacatcccta 77  Q
    |||||| ||| |||||||||||||| || ||||||||||||||||    
T  17563116 agatattacactatccgcatccatggatatccatttacatcccta 17563160  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 77
Target Start/End: Original strand, 34435133 - 34435176
Alignment:
Q  34 gatatcacattatccgcatccatgaatttccatttacatcccta 77  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||    
T  34435133 gatatcacactatccgcatccatgaatatccatttacatcccta 34435176  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 77
Target Start/End: Complemental strand, 8576544 - 8576501
Alignment:
Q  34 gatatcacattatccgcatccatgaatttccatttacatcccta 77  Q
    ||||||||| |||||||||||||| || ||||||||||||||||    
T  8576544 gatatcacactatccgcatccatggatatccatttacatcccta 8576501  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 77
Target Start/End: Complemental strand, 41039127 - 41039084
Alignment:
Q  34 gatatcacattatccgcatccatgaatttccatttacatcccta 77  Q
    |||||||||||||||||||||||| || ||||||||||||||||    
T  41039127 gatatcacattatccgcatccatggatatccatttacatcccta 41039084  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 51356980 - 51356934
Alignment:
Q  30 cacagatatcacattatccgcatccatgaatttccatttacatccct 76  Q
    ||||||||||||| |||||||||||||| || |||||||||||||||    
T  51356980 cacagatatcacactatccgcatccatggatatccatttacatccct 51356934  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 21287913 - 21287864
Alignment:
Q  30 cacagatatcacattatccgcatccatgaatttccatttacatccctaca 79  Q
    ||||||||||||| |||| ||||||||| || ||||||||||||||||||    
T  21287913 cacagatatcacactatctgcatccatggatatccatttacatccctaca 21287864  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 77
Target Start/End: Complemental strand, 4127794 - 4127751
Alignment:
Q  34 gatatcacattatccgcatccatgaatttccatttacatcccta 77  Q
    ||||||||| |||||||||||||| || ||||||||||||||||    
T  4127794 gatatcacactatccgcatccatggatatccatttacatcccta 4127751  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 13825706 - 13825659
Alignment:
Q  30 cacagatatcacattatccgcatccatgaatttccatttacatcccta 77  Q
    |||| |||||||| |||||||||||||| || ||||||||||||||||    
T  13825706 cacatatatcacactatccgcatccatggatatccatttacatcccta 13825659  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 25875041 - 25875085
Alignment:
Q  34 gatatcacattatccgcatccatgaatttccatttacatccctac 78  Q
    ||||||||| ||||| |||||||| || |||||||||||||||||    
T  25875041 gatatcacactatccacatccatgtatatccatttacatccctac 25875085  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 39800738 - 39800782
Alignment:
Q  34 gatatcacattatccgcatccatgaatttccatttacatccctac 78  Q
    ||||||||| |||||||||||||| || |||||||||||||||||    
T  39800738 gatatcacactatccgcatccatggatatccatttacatccctac 39800782  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 40056777 - 40056733
Alignment:
Q  34 gatatcacattatccgcatccatgaatttccatttacatccctac 78  Q
    ||||||||| |||||||||||||| || |||||||||||||||||    
T  40056777 gatatcacactatccgcatccatggatatccatttacatccctac 40056733  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 77
Target Start/End: Complemental strand, 23429028 - 23428985
Alignment:
Q  34 gatatcacattatccgcatccatgaatttccatttacatcccta 77  Q
    ||||||||| ||||||||||||||||| || |||||||||||||    
T  23429028 gatatcacactatccgcatccatgaatatctatttacatcccta 23428985  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 78
Target Start/End: Original strand, 33743048 - 33743090
Alignment:
Q  36 tatcacattatccgcatccatgaatttccatttacatccctac 78  Q
    ||||||| |||||||||||||| || |||||||||||||||||    
T  33743048 tatcacactatccgcatccatggatatccatttacatccctac 33743090  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 39207432 - 39207473
Alignment:
Q  34 gatatcacattatccgcatccatgaatttccatttacatccc 75  Q
    ||||||||| |||||||||||||| || ||||||||||||||    
T  39207432 gatatcacactatccgcatccatggatatccatttacatccc 39207473  T

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Target: scaffold0115 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 77
Target Start/End: Complemental strand, 21858 - 21815
Alignment:
Q  34 gatatcacattatccgcatccatgaatttccatttacatcccta 77  Q
    ||||||||| |||||||||||||| || ||||||||||||||||    
T  21858 gatatcacactatccgcatccatggatatccatttacatcccta 21815  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 13807370 - 13807323
Alignment:
Q  30 cacagatatcacattatccgcatccatgaatttccatttacatcccta 77  Q
    ||||||||||||| ||||||| |||||| || ||||||||||||||||    
T  13807370 cacagatatcacactatccgcgtccatggatatccatttacatcccta 13807323  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 42625348 - 42625392
Alignment:
Q  34 gatatcacattatccgcatccatgaatttccatttacatccctac 78  Q
    ||||||||| | |||||||||||| || |||||||||||||||||    
T  42625348 gatatcacactctccgcatccatggatatccatttacatccctac 42625392  T

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