View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2983_high_5 (Length: 369)
Name: NF2983_high_5
Description: NF2983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2983_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 92 - 252
Target Start/End: Complemental strand, 41550097 - 41549937
Alignment:
| Q |
92 |
ccctacctttcgatattttcattataaagttcttgacaacaacattgggacactagattataacatggtgtcgtcagtttcctactttgtccttatttta |
191 |
Q |
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| T |
41550097 |
ccctacctttcgatattttcattataaagttcttgacaacaacattgggacactagattataacatggtgtcgtcagtttcctactttgtccttatttta |
41549998 |
T |
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| Q |
192 |
tatctgttacatcacacttccaaactcctctaagtaacatccccaaatttatgctctattt |
252 |
Q |
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| T |
41549997 |
tatctgttacatcatacttccaaactcctctaagtaacatccccaaatttatgctctattt |
41549937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 286 - 362
Target Start/End: Complemental strand, 41549921 - 41549845
Alignment:
| Q |
286 |
ataataatacaactttttctatcttgctttgcctaactcatcactttctactttttgttttagttcttgttcatctc |
362 |
Q |
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| T |
41549921 |
ataataatacaactttttctatcttgctttgcctaactcatcactttgtactttttgttttagttcttgttcttctc |
41549845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 41550228 - 41550183
Alignment:
| Q |
1 |
tattggctcggtgcaattcatctgtctctactctccaaattgcaat |
46 |
Q |
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| T |
41550228 |
tattggctcggtgcaattcatctgtctctactctccaaattgcaat |
41550183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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