View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2983_high_6 (Length: 342)
Name: NF2983_high_6
Description: NF2983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2983_high_6 |
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| [»] scaffold0185 (1 HSPs) |
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| [»] scaffold0048 (3 HSPs) |
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Alignment Details
Target: scaffold0185 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: scaffold0185
Description:
Target: scaffold0185; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 5 - 325
Target Start/End: Original strand, 6935 - 7255
Alignment:
| Q |
5 |
tgtcgaagaatatttattcaacgtataagaaagtaaccaaagctactcaatcgtctttgacaactttatcttcagatagtccaaagttatcacaaccaaa |
104 |
Q |
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|||| ||| ||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6935 |
tgtcaaagcataattattcgacgtataagaaagtaaccaaagccactcaatcgtctttgacaactttatcttcagatagtccaaagttatcacaaccaaa |
7034 |
T |
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| Q |
105 |
gaaaatgtccaccaaagaaaaacatgagaaagaaactagccgaggaagcgcaatattagagaagcaaaagaagtttgagttttatgcaatgtgtttggtt |
204 |
Q |
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| T |
7035 |
gaaaatgtccaccaaaggaaaacatgagaaagaaactagccgaggaagcgcaatattagagaagcaaaagaagtttgagttttatgcaatgtggttggtt |
7134 |
T |
|
| Q |
205 |
ctcataagcttagtatttacgatgtgttttgggaaactctttggaannnnnnngacttcaatatgcatcttccttttctctctttgcaactcaaactata |
304 |
Q |
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||||||||||||||||||||| |||||||||||||||| ||||||| ||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
7135 |
ctcataagcttagtatttacggtgtgttttgggaaactatttggaatttttttgacatcaatatggatcttccttttctctctttgcaactcaaactata |
7234 |
T |
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| Q |
305 |
gctgccaaaagatgttgctat |
325 |
Q |
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| T |
7235 |
gctgccaaaagatgttgctat |
7255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: scaffold0048
Description:
Target: scaffold0048; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 13 - 325
Target Start/End: Original strand, 47682 - 47994
Alignment:
| Q |
13 |
aatatttattcaacgtataagaaagtaaccaaagctactcaatcgtctttgacaactttatcttcagatagtccaaagttatcacaaccaaagaaaatgt |
112 |
Q |
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||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||| |||||||| |||||| | || |
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| T |
47682 |
aatatttattcgacgtataagaaagtaaccaaagctacgcaatcgtctttgtcaactttatcttcagatagttcaaaggtatcacaatcaaagatcacgt |
47781 |
T |
|
| Q |
113 |
ccaccaaagaaaaacatgagaaagaaactagccgaggaagcgcaatattagagaagcaaaagaagtttgagttttatgcaatgtgtttggttctcataag |
212 |
Q |
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| T |
47782 |
ccaccaaaggaaaacatgagaaagatactagccgaagaagcgcaatattagagaaataaaagaagtttgagtttcatgcaatttgtttggttctcataag |
47881 |
T |
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| Q |
213 |
cttagtatttacgatgtgttttgggaaactctttggaannnnnnngacttcaatatgcatcttccttttctctctttgcaactcaaactatagctgccaa |
312 |
Q |
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| T |
47882 |
attagtatttatggtgttttttgggaaactatttggaatattttttacttcaatttcgatcttccttttctctctttggaactcaaactatagatgccaa |
47981 |
T |
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| Q |
313 |
aagatgttgctat |
325 |
Q |
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| T |
47982 |
aagatgttgctat |
47994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 5 - 322
Target Start/End: Complemental strand, 85560 - 85243
Alignment:
| Q |
5 |
tgtcgaagaatatttattcaacgtataagaaagtaaccaaagctactcaatcgtctttgacaactttatcttcagatagtccaaagttatcacaaccaaa |
104 |
Q |
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|||| ||| ||| |||||| |||||||||||||||||||| || ||||||||||||||||||| |||||||||||||| | ||| | |||||||| |||| |
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| T |
85560 |
tgtcaaagcataattattcgacgtataagaaagtaaccaacgccactcaatcgtctttgacaagtttatcttcagataattcaacggtatcacaatcaaa |
85461 |
T |
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| Q |
105 |
gaaaatgtccaccaaagaaaaacatgagaaagaaactagccgaggaagcgcaatattagagaagcaaaagaagtttgagttttatgcaatgtgtttggtt |
204 |
Q |
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||| ||||||||||||| |||||||||||||||||||| | || |||||||||||||||||| |||||||||||||||||| |||||| ||||||||| |
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| T |
85460 |
gaacatgtccaccaaaggaaaacatgagaaagaaactaaacaagaaagcgcaatattagagaaacaaaagaagtttgagtttcgtgcaatttgtttggtt |
85361 |
T |
|
| Q |
205 |
ctcataagcttagtatttacgatgtgttttgggaaactctttggaannnnnnngacttcaatatgcatcttccttttctctctttgcaactcaaactata |
304 |
Q |
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|| ||||||||||||||||| ||| ||| |||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
85360 |
ctaataagcttagtatttactgtgtttttcgggaaactatttggaatttttctgacttcaatatggatcttccttttctctctttgcaactcaaactata |
85261 |
T |
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| Q |
305 |
gctgccaaaagatgttgc |
322 |
Q |
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| T |
85260 |
ggtgccgaaagatgttgc |
85243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 13 - 325
Target Start/End: Original strand, 60286 - 60598
Alignment:
| Q |
13 |
aatatttattcaacgtataagaaagtaaccaaagctactcaatcgtctttgacaactttatcttcagatagtccaaagttatcacaaccaaagaaaatgt |
112 |
Q |
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||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || |||||||||||||| ||||| |||||||| |||||| |||| |
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| T |
60286 |
aatatttattcaacgtataagaaagtagccaaagctactgaatcgtctttgacagctatatcttcagatagttcaaaggtatcacaatcaaagatcatgt |
60385 |
T |
|
| Q |
113 |
ccaccaaagaaaaacatgagaaagaaactagccgaggaagcgcaatattagagaagcaaaagaagtttgagttttatgcaatgtgtttggttctcataag |
212 |
Q |
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||||||||| |||||| |||||||| ||| ||||||||||| ||||| |||||||||||||||| ||||||||||||||||| | |||||| |||||||| |
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| T |
60386 |
ccaccaaaggaaaacaagagaaagatacttgccgaggaagcacaataatagagaagcaaaagaattttgagttttatgcaatttctttggtactcataag |
60485 |
T |
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| Q |
213 |
cttagtatttacgatgtgttttgggaaactctttggaannnnnnngacttcaatatgcatcttccttttctctctttgcaactcaaactatagctgccaa |
312 |
Q |
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|||||||||||| ||| |||||||||| | ||||| | ||| || ||||| |||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
60486 |
cttagtatttactgtgttttttgggaaaatatttggtatttttttgacatcgatatggatcttccttttctctctttggaactcaaactatatctgccaa |
60585 |
T |
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| Q |
313 |
aagatgttgctat |
325 |
Q |
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||||||||||||| |
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| T |
60586 |
aagatgttgctat |
60598 |
T |
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