View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2983_low_1 (Length: 675)
Name: NF2983_low_1
Description: NF2983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2983_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 360 - 666
Target Start/End: Complemental strand, 29435033 - 29434730
Alignment:
| Q |
360 |
ttcacaacacattttaaaatatatatacaacgaaatactatagcaaggtccttctttgtgacgaataagatcttgagatttaaatcaattgnnnnnnntg |
459 |
Q |
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| T |
29435033 |
ttcacaacacattttaaaatatatatacaacgaaataccatagcaaggtcctt---tgtgacgaataagatcttgagatttaaatcaattgaaaaaaatg |
29434937 |
T |
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| Q |
460 |
gttcaattctcaccatagaagtacacaacaaagtatctgatatagttaaaattgaaaatcagtttgttataaggaattttctgattgacaagcctgaatg |
559 |
Q |
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| T |
29434936 |
gttcaattctcaccatagaagtacacaacaaagtatctgatatagttaaaattgaaaatcagtttgttataaggaattttctgattgacaagcctgaatg |
29434837 |
T |
|
| Q |
560 |
gaggatttaccatccaatttttcagaagaatttaccccatttaagcttttattaaatttttctccaagctttaaccattcagcttgaatattttcttgga |
659 |
Q |
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| T |
29434836 |
gaggatttaccatccaatttttcagaagaatttaccccatttaagcttttattaaatttttctccaagctttaaccattcagcttgaatattttcttgga |
29434737 |
T |
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| Q |
660 |
tattctt |
666 |
Q |
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| T |
29434736 |
ttttctt |
29434730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 17 - 323
Target Start/End: Complemental strand, 29435446 - 29435135
Alignment:
| Q |
17 |
acaaccaaaatgatgacgatttactctaaaagaaatgaaaagagacatttcnnnnnnngatggtgatgagagtcgcatggaccactaaacaaagttgtgg |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||| |||| ||||||| |||||||||||| |
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| T |
29435446 |
acaaccaaaatgatgacgatttactctaaaagaaatgaaaagagatatttctttttttggtggtgatgagagtcacatgaaccactacacaaagttgtgg |
29435347 |
T |
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| Q |
117 |
attcacaggggaatatctgtagaagccacatagggacccataccgaagaggagatgattgttagtatccatgtaggagagaggagtgccaacatggcact |
216 |
Q |
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| T |
29435346 |
attcataaaggaatatatgtagaagccacatagggacccatac---agaggagatgattgttagtatccatgtaggagagaggagtgccaacatggcact |
29435250 |
T |
|
| Q |
217 |
tatggacaac--------nnnnnnntaagaataaagcataattactgatttacnnnnnnnctataaaaagcataaatattgatttactttcttgagataa |
308 |
Q |
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|| | ||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||| |
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| T |
29435249 |
taatggtaactaaagacaaaaaaaataagaataaagcataattactgatttactttttttctataaaaagcttaaatattgatttacttttttgagataa |
29435150 |
T |
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| Q |
309 |
aaataaagtactcaa |
323 |
Q |
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|||||| ||| |||| |
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| T |
29435149 |
aaataatgtattcaa |
29435135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 359
Target Start/End: Complemental strand, 29435085 - 29435048
Alignment:
| Q |
322 |
aagggacaaaaagaggaattaagcctaaaatttataag |
359 |
Q |
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| T |
29435085 |
aagggacaaaaagagcaattaaacctaaaatttataag |
29435048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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