View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2983_low_10 (Length: 329)
Name: NF2983_low_10
Description: NF2983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2983_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 143 - 314
Target Start/End: Original strand, 34350593 - 34350763
Alignment:
| Q |
143 |
catgaattgaagttttcaaccatatttaacagcacaatattctcagcaacactaccacaacattatccacatggaaaataaaataaaatctgtcatgaat |
242 |
Q |
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| T |
34350593 |
catgaattgaagttttcaaccatatttaacagcacaatattctcagcaacacctccacaacattatccacagggaaaataaaataaaatctgtcatgaat |
34350692 |
T |
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| Q |
243 |
aggttcgattatgttacatcaccccaagagaaattatgtaacctctccaacatgtaccagaaacgtaaaaac |
314 |
Q |
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|||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
34350693 |
aggttcgattatgtaacatca-cccaagagaaattatgtaacctctccaacctgtaccagaaacgtaaaaac |
34350763 |
T |
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Target: chr4 (Bit Score: 136; Significance: 6e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 143 - 314
Target Start/End: Complemental strand, 6349169 - 6348999
Alignment:
| Q |
143 |
catgaattgaagttttcaaccatatttaacagcacaatattctcagcaacactaccacaacattatccacatggaaaataaaataaaatctgtcatgaat |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
6349169 |
catgaattgaagttttcaaccatatttaacagcacaatattctcagcaacacctccacaacattatccacggggaaaataaaataaaatttgtcatgaat |
6349070 |
T |
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| Q |
243 |
aggttcgattatgttacatcaccccaagagaaattatgtaacctctccaacatgtaccagaaacgtaaaaac |
314 |
Q |
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|||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
6349069 |
aggttcgattatgtaacatca-cccaagagaaattatgtaacctctccaacctgtaccagaaacgtaaaaac |
6348999 |
T |
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