View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2983_low_11 (Length: 318)
Name: NF2983_low_11
Description: NF2983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2983_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 25 - 300
Target Start/End: Complemental strand, 8358345 - 8358070
Alignment:
| Q |
25 |
gactcttgatcactaaattcactcataaacctcttcaatatttcacatttactaccaacattcttcacacaaacttgagcaaccatttttctatgttcca |
124 |
Q |
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| T |
8358345 |
gactcttgatcactaaattcactcataaacctcttcaatatttcacatttactaccaacattcttcacacaaacttgagcaaccatttttctatgttcca |
8358246 |
T |
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| Q |
125 |
cctcatcattcaacctcttcaccatcctactcatagtatccaaatcatttatcaatataaaaacccctttcgcagcagcatcaagttgttcacatagtct |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8358245 |
cctcatcattcaacctcttcaccatcctactcatagtatccaaatcatttatcaatataaaaacccctttcgcagcagcatcaagttgttcacatagtct |
8358146 |
T |
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| Q |
225 |
ttcccaattagttctattttttattctctttatgaacaaaccaactaaaccacctacaatacttggtgcagccact |
300 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8358145 |
ttcgcaattagttctattttttattctctttatgaacaaaccaactaaaccacctacaatacttggtgcagccact |
8358070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 163; Significance: 5e-87; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 17 - 300
Target Start/End: Original strand, 28593217 - 28593515
Alignment:
| Q |
17 |
aaaagctagactcttgatcactaaattcactcataaacctcttcaatatttcacatttactaccaacatt---cttcacacaaacttgagcaaccatttt |
113 |
Q |
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||||||||||||||||||| | | |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| | ||||| ||||| |
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| T |
28593217 |
aaaagctagactcttgatctcgatattcactcataaccctcttcaatatttcacatttactaccaacattattcttcacacaaacatcagcaaaaatttt |
28593316 |
T |
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| Q |
114 |
tctatgttccacctcatcattcaacctcttcaccatcctactcatagtatccaaatcatttatcaatataaaaacccctttcgcagcagcatcaagttgt |
213 |
Q |
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| T |
28593317 |
cctatgctccacttcatcattcaacctcttcaccatcctactcatagtatccaaatcatttatcaatataaaaaccccttttgcagcagcatcaagttgt |
28593416 |
T |
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| Q |
214 |
tcacatagtctttcccaattag---tt---------ctattttttattctctttatgaacaaaccaactaaaccacctacaatacttggtgcagccact |
300 |
Q |
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|||||||||||||| |||| || || ||| |||| ||| ||||||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
28593417 |
tcacatagtctttcacaataagaacttcttcttaacctaattttgattttctttatgaacaaaccaaccaaactacctacaatacttggtgcagccact |
28593515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 136 - 227
Target Start/End: Complemental strand, 53447805 - 53447714
Alignment:
| Q |
136 |
aacctcttcaccatcctactcatagtatccaaatcatttatcaatataaaaacccctttcgcagcagcatcaagttgttcacatagtctttc |
227 |
Q |
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|||||||| ||||| | ||||||||||||||||||||||||| |||| |||||||||| |||||| |||||| ||||||| ||||| |||| |
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| T |
53447805 |
aacctcttaaccatacggctcatagtatccaaatcatttatcactatataaaccccttttgcagcaacatcaatttgttcatatagtttttc |
53447714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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