View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2983_low_13 (Length: 243)
Name: NF2983_low_13
Description: NF2983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2983_low_13 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 22 - 243
Target Start/End: Original strand, 11358095 - 11358316
Alignment:
| Q |
22 |
gtttctgcaaccttgctaatcaaattcaagtatgacagaagagacttctttcttagacaagtacagcttctccttaaattcttcgatgaccggagatttt |
121 |
Q |
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| T |
11358095 |
gtttctgcaaccttgctaatcaaattcaagtatgacagaagagacttctttcttagacaagtacagcttctccttaaattcttcgatgactggagatttt |
11358194 |
T |
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| Q |
122 |
cccttcctcccattaacaagggagaaattcatcctctcaagcactatacaattttccataaaaaatttagcgcaaaacagctcaggctctgatacacggg |
221 |
Q |
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| T |
11358195 |
cccttcctcccattaacaagggagaaattcatcctctcaagcactatacaatgttccataaaaaatttggcgcaaaacagctcaggctctgatacacggg |
11358294 |
T |
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| Q |
222 |
cattatcaaatttcacaacctt |
243 |
Q |
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| T |
11358295 |
cattatcaaatttcacaacctt |
11358316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 30679529 - 30679476
Alignment:
| Q |
138 |
caagggagaaattcatcctctcaagcactatacaattttccataaaaaatttag |
191 |
Q |
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| T |
30679529 |
caagggagaaactcatcctctcaagcactgtaccattttccataaaaaatttag |
30679476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 192
Target Start/End: Complemental strand, 30717368 - 30717219
Alignment:
| Q |
43 |
aaattcaagtatgacagaagagacttctttcttagacaagtacagcttctccttaaattcttcgatgaccggagattttcccttcctcccattaacaagg |
142 |
Q |
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| T |
30717368 |
aaattcaagtatggcaaaagagactcctttcttaaatgagtacaacttctccttgaattcttcaataaccttagaatcaatctgccatgcattagcaaaa |
30717269 |
T |
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| Q |
143 |
gagaaattcatcctctcaagcactatacaattttccataaaaaatttagc |
192 |
Q |
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| T |
30717268 |
gagaaactcatcctctcaagcactataccattttccattaaatatttagc |
30717219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 105
Target Start/End: Complemental strand, 30710922 - 30710860
Alignment:
| Q |
43 |
aaattcaagtatgacagaagagacttctttcttagacaagtacagcttctccttaaattcttc |
105 |
Q |
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| T |
30710922 |
aaattcaagtatggcaaaagagactcctttcttgaatgagtacagcttctccttaaattcttc |
30710860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 30710838 - 30710785
Alignment:
| Q |
139 |
aagggagaaattcatcctctcaagcactatacaattttccataaaaaatttagc |
192 |
Q |
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| T |
30710838 |
aagggagaaactcgtcctctcaagcaccacaccattttccataaaaaatttagc |
30710785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 177
Target Start/End: Complemental strand, 30725048 - 30724921
Alignment:
| Q |
47 |
tcaagtatgacagaagagacttctttcttagacaagtacagcttctccttaaattcttcgatgaccggagattttcccttcctcccattaacaagggaga |
146 |
Q |
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| T |
30725048 |
tcaagtatggcaaaagagactcctttcttgaatgagtacagcttctccttaaattcttcaatcacagtggatttac---tcctctcatcataaaaggaga |
30724952 |
T |
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| Q |
147 |
aattcatcctctcaagcactatacaattttc |
177 |
Q |
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| T |
30724951 |
aactcatcctctcaagcaccataccattttc |
30724921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 205
Target Start/End: Original strand, 5130947 - 5130985
Alignment:
| Q |
167 |
atacaattttccataaaaaatttagcgcaaaacagctca |
205 |
Q |
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| T |
5130947 |
atacaattttccataaaaaatttagctaaaaacagctca |
5130985 |
T |
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