View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2983_low_15 (Length: 226)
Name: NF2983_low_15
Description: NF2983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2983_low_15 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 20 - 226
Target Start/End: Original strand, 32223756 - 32223960
Alignment:
| Q |
20 |
ttgattatgtcgtagcagcgattaaagagtnnnnnnnntcataaaataatgacattgacgactagcaagtatccttagagagtcacatgaaatgtgaatg |
119 |
Q |
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| T |
32223756 |
ttgattatgtcgtagcagcgattaaagagtaaaaaaa-tcataaaataatgacattgacgactagcaagtatccttagagagtcacatgaaatgtgaatg |
32223854 |
T |
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| Q |
120 |
agtgaaaggtcgagtgacataatcgaccaaacatttaaagcttctgcaaaatctgacagatgggggatttgtgcaaaggaaggtagacctcaaccaattg |
219 |
Q |
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| T |
32223855 |
agtgaaaggtcaagtgacataatcga-caaacatttaaagcttctgcaaaatctgacagatgggggatttgtgcaaaggaaggtagacctcaaccaattg |
32223953 |
T |
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| Q |
220 |
tgaggat |
226 |
Q |
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|||||| |
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| T |
32223954 |
agaggat |
32223960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 61 - 216
Target Start/End: Original strand, 32241073 - 32241229
Alignment:
| Q |
61 |
taaaataatgacattga-cgactagcaagtatccttagagagtcacatgaaatgtgaatgagtgaaaggtcgagtgacataatcgaccaaacatttaaag |
159 |
Q |
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| T |
32241073 |
taaaataacgacattgaacgaatagcaagtatccttagagagtcacatgaaatgtgaatgagtgaaaggtcgagtgacataatcgaccaaacatttaaag |
32241172 |
T |
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| Q |
160 |
cttctgcaaaatctgacagatgggggatttgtgcaaaggaaggtagacctcaaccaa |
216 |
Q |
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| T |
32241173 |
ctccttcaaaatctgacagatgagggatttgtgcaaaggatggtagacctcaaccaa |
32241229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 102 - 196
Target Start/End: Original strand, 16257635 - 16257730
Alignment:
| Q |
102 |
tcacatgaaatgtgaatgagtgaaaggtcgagtgacataatcgaccaaacatttaaagcttctgc-aaaatctgacagatgggggatttgtgcaaa |
196 |
Q |
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| T |
16257635 |
tcacatgaaatgtgaatgactgaaaggtcgagtgacataatcgaccaaacattttaatctcctgcaaaaatctgacaaatgacggatttctgcaaa |
16257730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 99 - 208
Target Start/End: Complemental strand, 8675913 - 8675805
Alignment:
| Q |
99 |
gagtcacatgaaatgtgaatgagtgaaaggtcgagtgacataatcgaccaaacatttaaagcttctgcaaaatctgacagatgggggatttgtgcaaagg |
198 |
Q |
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||||| |||||||||| ||||||||||||||| ||||||| |||||| |||||||||| |||| | | |||||||||| || |||||||||| ||||| |
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| T |
8675913 |
gagtcgcatgaaatgttaatgagtgaaaggtcaagtgacacaatcgaacaaacatttacagctccaac-aaatctgacaaataagggatttgtgtaaagg |
8675815 |
T |
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| Q |
199 |
aaggtagacc |
208 |
Q |
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| T |
8675814 |
aaggtagacc |
8675805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 208
Target Start/End: Original strand, 1347138 - 1347247
Alignment:
| Q |
99 |
gagtcacatgaaatgtgaatgagtgaaagg-tcgagtgacataatcgaccaaacatttaaagcttctgcaaaatctgacagatgggggatttgtgcaaag |
197 |
Q |
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||||||||||||||| |||||| |||||| || ||||||| |||| | ||| || || ||||| | ||||| |||||| || ||||||||||||||| |
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| T |
1347138 |
gagtcacatgaaatgcgaatgaaagaaagggtcaagtgacacaatcaatcaagcacttcaagctccaacaaaa-ctgacaaattagggatttgtgcaaag |
1347236 |
T |
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| Q |
198 |
gaaggtagacc |
208 |
Q |
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| T |
1347237 |
gaaggtagacc |
1347247 |
T |
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