View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2983_low_16 (Length: 226)
Name: NF2983_low_16
Description: NF2983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2983_low_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 47782393 - 47782199
Alignment:
| Q |
16 |
atgaagttgcaaacctcaaataacagcttggtctaatcattctagcactactcctattgctaaatcttgaaattccagcaatagattgaagcaaacaatc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47782393 |
atgaagttgcaaacctcaaataacagcttggtctaatcattctagcactactcctattgctaaatcttgaaattccagcaatagattgaagcaaacaatc |
47782294 |
T |
|
| Q |
116 |
atcacattgtggaccagacaagtcaggtgtacactgaacaagaccatatattgtttcaccactactttgttgagaaggtgattgattattactag |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47782293 |
atcacattgtggaccagacaagtcaggtgtacactgaacaagaccatatattgtttcaccactactttgttgagaaggtgattgattattactag |
47782199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 16 - 181
Target Start/End: Complemental strand, 47788583 - 47788415
Alignment:
| Q |
16 |
atgaagttgcaaacctcaaataacagcttggtctaatcattctagcactactcctattgctaaa---tcttgaaattccagcaatagattgaagcaaaca |
112 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||| |||||||||| | ||||||||||| | |||||||| | ||||||| |||||||||||||| |
|
|
| T |
47788583 |
atgaagtttcaaacctcaaattacagcttggtctaataattctagcaccaatcctattgctacaacatcttgaaacttcagcaatggattgaagcaaaca |
47788484 |
T |
|
| Q |
113 |
atcatcacattgtggaccagacaagtcaggtgtacactgaacaagaccatatattgtttcaccactact |
181 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
47788483 |
atcatcacactgtggaccagacaagtcaggagtacactgaacaagaccatatattgtttgatcactact |
47788415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 171
Target Start/End: Complemental strand, 47778461 - 47778303
Alignment:
| Q |
16 |
atgaagttgcaaacctcaaataacagcttggtctaatcattctagcactactcctattgctaaa---tcttgaaattccagcaatagattgaagcaaaca |
112 |
Q |
| |
|
|||||||| |||||||||||| |||||| ||||||| |||||||||| | ||||||| || | |||||||||| | | |||||| | | ||| || |
|
|
| T |
47778461 |
atgaagtttcaaacctcaaattacagctaggtctaacaattctagcaccaatcctatttttacaacatcttgaaatttctgtaatagactcattcaagca |
47778362 |
T |
|
| Q |
113 |
atcatcacattgtggaccagacaagtcaggtgtacactgaacaagaccatatattgttt |
171 |
Q |
| |
|
|| |||||||||||||||| || ||||||||||||||| ||||||||||||| |||| |
|
|
| T |
47778361 |
attggcacattgtggaccagataaatcaggtgtacactgagcaagaccatatatagttt |
47778303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 91 - 181
Target Start/End: Complemental strand, 47811820 - 47811730
Alignment:
| Q |
91 |
cagcaatagattgaagcaaacaatcatcacattgtggaccagacaagtcaggtgtacactgaacaagaccatatattgtttcaccactact |
181 |
Q |
| |
|
|||||||||||| | |||||| |||||||| |||| | | ||||| ||||||||||||||||||||||||| |||||||| | ||||||| |
|
|
| T |
47811820 |
cagcaatagattcattcaaacagtcatcacactgtgaaaccgacaaatcaggtgtacactgaacaagaccatttattgtttgatcactact |
47811730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 47745591 - 47745632
Alignment:
| Q |
132 |
gacaagtcaggtgtacactgaacaagaccatatattgtttca |
173 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
47745591 |
gacaagtcaggtgtacactgcacaagaccatatatggtttca |
47745632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University