View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2983_low_2 (Length: 588)
Name: NF2983_low_2
Description: NF2983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2983_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 159; Significance: 2e-84; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 389 - 555
Target Start/End: Original strand, 28541407 - 28541573
Alignment:
| Q |
389 |
agagaaaaataagtgcaaatgaagtttgtcctattttgactatagagaagaggaaacttttgtagggatttttcatttatttttcagcaatactcaattg |
488 |
Q |
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| T |
28541407 |
agagaaaaataagtgcaaatgaagtttttcctattttgactatagagaagaggaaacttttgtagggatttttcatttatttttcagcaatactcaattg |
28541506 |
T |
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| Q |
489 |
ccaacaaaagaacgaaagagccacatgaaaacatgcatctattcatttagttgtctattattgtaac |
555 |
Q |
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| T |
28541507 |
ccaacaaaagaacgaaagagccacgtgaaaacatgcatctattcatttagttgtctattattgtaac |
28541573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 37 - 163
Target Start/End: Original strand, 28540542 - 28540668
Alignment:
| Q |
37 |
aatgagatgaacatataaagtctactttaaataatcaatgttggcacttttccctccataattatgagtgttgattgatcatgcttaggttagcaattta |
136 |
Q |
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| T |
28540542 |
aatgatatgaacatataaagtctactttaaatcaacaatgttggcacttttctctccataattatgagtgttgattgatcatgcttaggttagcaattta |
28540641 |
T |
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| Q |
137 |
atgtctagttttaagacaactatcttt |
163 |
Q |
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| T |
28540642 |
atgtctagttttaagacaactatcttt |
28540668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 148 - 210
Target Start/End: Original strand, 28541245 - 28541307
Alignment:
| Q |
148 |
taagacaactatctttaacagtagaatttaaatatgtagtttgattgaggtgttataaaagac |
210 |
Q |
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| T |
28541245 |
taagacaactatctttaacaatagaatttaaatatgtagtttgattgaggtgttataaaagac |
28541307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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