View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2983_low_3 (Length: 486)

Name: NF2983_low_3
Description: NF2983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2983_low_3
NF2983_low_3
[»] chr4 (55 HSPs)
chr4 (15-469)||(27571556-27572007)
chr4 (15-300)||(27411379-27411663)
chr4 (22-312)||(27567195-27567485)
chr4 (15-312)||(27414212-27414511)
chr4 (15-313)||(27421841-27422142)
chr4 (15-302)||(27424432-27424721)
chr4 (15-298)||(27418996-27419278)
chr4 (59-217)||(27556384-27556542)
chr4 (60-221)||(27478884-27479045)
chr4 (60-221)||(27485944-27486105)
chr4 (108-221)||(27506724-27506837)
chr4 (107-221)||(27412689-27412803)
chr4 (66-263)||(27513735-27513932)
chr4 (109-221)||(27444795-27444907)
chr4 (109-260)||(27431110-27431261)
chr4 (124-221)||(27563347-27563444)
chr4 (66-221)||(27486967-27487122)
chr4 (111-221)||(27585717-27585827)
chr4 (131-221)||(27595434-27595524)
chr4 (64-221)||(27559241-27559398)
chr4 (108-260)||(27425838-27425990)
chr4 (109-217)||(27557516-27557624)
chr4 (66-221)||(27526113-27526268)
chr4 (66-221)||(27479885-27480040)
chr4 (101-220)||(27501336-27501455)
chr4 (66-221)||(27505703-27505858)
chr4 (60-202)||(27527139-27527281)
chr4 (66-223)||(27498399-27498556)
chr4 (124-221)||(27503964-27504061)
chr4 (66-221)||(27476671-27476826)
chr4 (137-220)||(27554364-27554447)
chr4 (111-221)||(27415650-27415760)
chr4 (124-221)||(27468328-27468425)
chr4 (124-221)||(27475580-27475677)
chr4 (124-217)||(27524566-27524659)
chr4 (126-218)||(27490004-27490096)
chr4 (124-220)||(27514933-27515029)
chr4 (59-221)||(27446124-27446286)
chr4 (124-221)||(27420450-27420547)
chr4 (60-221)||(27497323-27497484)
chr4 (111-260)||(27565913-27566062)
chr4 (124-221)||(27570050-27570147)
chr4 (108-220)||(27502809-27502921)
chr4 (126-221)||(17970343-17970438)
chr4 (174-220)||(27507815-27507861)
chr4 (171-221)||(27600642-27600692)
chr4 (124-221)||(27423264-27423361)
chr4 (178-223)||(27473988-27474033)
chr4 (178-221)||(27460574-27460617)
chr4 (178-221)||(27466917-27466960)
chr4 (66-221)||(27469444-27469599)
chr4 (166-221)||(27495620-27495675)
chr4 (126-217)||(27508896-27508987)
chr4 (171-217)||(27577407-27577453)
chr4 (165-221)||(27502136-27502192)
[»] chr5 (3 HSPs)
chr5 (66-221)||(1756758-1756913)
chr5 (51-250)||(1755967-1756166)
chr5 (66-220)||(1754243-1754397)
[»] chr3 (16 HSPs)
chr3 (66-221)||(55084770-55084925)
chr3 (43-217)||(50913457-50913631)
chr3 (60-217)||(38032260-38032417)
chr3 (60-217)||(38035033-38035190)
chr3 (60-217)||(38038525-38038682)
chr3 (60-217)||(38027433-38027590)
chr3 (108-221)||(38043929-38044042)
chr3 (66-221)||(38024876-38025031)
chr3 (66-221)||(38031328-38031483)
chr3 (126-221)||(50910004-50910099)
chr3 (66-221)||(50911870-50912025)
chr3 (175-221)||(48840713-48840759)
chr3 (164-221)||(38028767-38028824)
chr3 (129-221)||(50904793-50904885)
chr3 (66-221)||(38036794-38036949)
chr3 (164-221)||(38040082-38040139)
[»] chr8 (3 HSPs)
chr8 (60-217)||(21608235-21608392)
chr8 (147-221)||(21634608-21634682)
chr8 (164-221)||(21607297-21607354)
[»] chr2 (1 HSPs)
chr2 (126-221)||(3073613-3073708)


Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 55)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 15 - 469
Target Start/End: Original strand, 27571556 - 27572007
Alignment:
Q  15 agaatgccatcattttcctcaacgcaagcatctagcaagggatttgaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttg 114  Q
    ||||||||||||||||||  ||| ||||   ||  ||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| |    
T  27571556 agaatgccatcattttccaaaacacaagagactgccaagggacttgaagtcccaaaaggctatctcgcagtctatgttggagatagaatgaggcggttcg 27571655  T
Q  115 tgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaat 214  Q
    |||||||| ||||||| |||| ||| ||||  ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  27571656 tgattccagtatcatatttgagccagccatcgtttcaagaattactaaatcaatcagaagaagaatttggatatgatcatccaatgggtggtctcacaat 27571755  T
Q  215 tccttgcggcgaggatgaattcctaaatcttacttctcgcttgaattgagctctagatcatgctaatggagatttagatagattagttgaagctaattac 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27571756 tccttgcggcgaggatgaattcctaaatcttacttctcgcttgaattgagctctagatcatgctaatggagatttagatagattagttgaagctaattac 27571855  T
Q  315 tatagaaaccannnnnnnnnnnnctgttgaagannnnnnnattgttccgtccatgtattaatcaatcattcctacggaaatcaaaatgtttcctgaatga 414  Q
    |||||||||||            ||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27571856 tatagaaacca--ttttttttttctgttgaaga-ttttttattgttccgtccatgtattaatcaatcattcctacggaaatcaaaatgtttcctgaatga 27571952  T
Q  415 gaatgttaaattattaatgacaccaaatattgttgaaacagttgcagcttttttc 469  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27571953 gaatgttaaattattaatgacaccaaatattgttgaaacagttgcagcttttttc 27572007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 15 - 300
Target Start/End: Complemental strand, 27411663 - 27411379
Alignment:
Q  15 agaatgccatcattttcctcaacgcaagcatctagcaagggatttgaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttg 114  Q
    ||||||||||||||||||  ||| |||| ||||| ||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |    
T  27411663 agaatgccatcattttccaaaacacaagaatctaccaagggacttgaagtcccaaaaggctatctcgcagtctatgttggagatagaatgagacggttcg 27411564  T
Q  115 tgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaat 214  Q
    |||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27411563 tgattccagtatcatacttgaaccaaccatcgtttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaat 27411464  T
Q  215 tccttgcggcgaggatgaattcctaaatcttacttctcgcttgaattgagctctagatcatgctaatggagatttagatagattag 300  Q
    ||||||| ||||||||||||||| ||| || || ||||| ||| | ||| || || |||| ||||||||||||| |||||||||||    
T  27411463 tccttgcagcgaggatgaattccaaaacctcacatctcgtttg-agtgaactgtaaatcaagctaatggagattaagatagattag 27411379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 22 - 312
Target Start/End: Original strand, 27567195 - 27567485
Alignment:
Q  22 catcattttcctcaacgcaagcatctagcaagggatttgaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattcc 121  Q
    |||||||||||  ||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||    
T  27567195 catcattttccaaaactcaaggatctagcaagggatttgaagtcccaaaaggctatctcgcagtctatgttggagatagaatgagacggttcgtgattcc 27567294  T
Q  122 attatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 221  Q
    | |||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  27567295 agtatcatacttgaaccaaccatcgtttcaagaattactaaatcaaacagaagaagaatttggttatgatcatccaatgggtggtctcacaattccttgc 27567394  T
Q  222 ggcgaggatgaattcctaaatcttacttctcgcttgaattgagctctagatcatgctaatggagatttagatagattagttgaagctaatt 312  Q
     |||| ||||  ||| || | || ||||||| |||||||||||||  || |||||| |||||||||||||||||| ||||||| |||||||    
T  27567395 agcgaagatgctttcttagaactcacttctcacttgaattgagctgaaggtcatgcaaatggagatttagatagaatagttgaggctaatt 27567485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 15 - 312
Target Start/End: Complemental strand, 27414511 - 27414212
Alignment:
Q  15 agaatgccatcattttcctcaacgcaagcatctagcaagggatttgaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttg 114  Q
    |||| |||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||| ||||| || ||||| |||| ||||||||||||||    
T  27414511 agaaagccatcattttcgtcaacacaagcatctagcaagggatttgaagtgccaaaaggctatcttgcagtctacgttggagataaaatgagacggtttg 27414412  T
Q  115 tgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaat 214  Q
    |||||||  ||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||    
T  27414411 tgattcctgtatcatacttgaaccaaccctcatttcaagaattactaaatcaatcagaagaagaatttggatatgatcatccaatgggtggtcttacaat 27414312  T
Q  215 tccttgcggcgaggatgaattcctaaatcttacttctcgcttgaattgagctctag--atcatgctaatggagatttagatagattagttgaagctaatt 312  Q
    ||| ||| | || |||||||||| ||| || ||||||||| ||||||||||| |||  || ||||||| |||| |||||||||||||||||| |||||||    
T  27414311 tccgtgcagtgaagatgaattccaaaacctcacttctcgcatgaattgagctgtagatattatgctaacggagctttagatagattagttgaggctaatt 27414212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 15 - 313
Target Start/End: Complemental strand, 27422142 - 27421841
Alignment:
Q  15 agaatgccatcattttcctcaacgcaagcatctagcaagggatttgaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttg 114  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||| |    
T  27422142 agaatgccatcattttcctcaacgcaagcatctaccaagggatttgaagtcccaaaaggctatctcgcagtctatgttggagatagaatgaaacggttcg 27422043  T
Q  115 tgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaattt----ggatatgatcatcctatgggtggtctca 210  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||| |||||||| | |||||||||||    
T  27422042 tgattccagtatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatggatacgatcatccaacgggtggtctca 27421943  T
Q  211 caattccttgcggcgaggatgaattcctaaatcttacttctcgcttgaattgagctctagatcatgctaatggagatttagatagattagttgaagctaa 310  Q
    ||||||||||| | || |||   ||| || | || |||||||| |||||||||||  || |||||||||||  ||| ||||||||||||||| | |||||    
T  27421942 caattccttgcagtgaagattctttcttacaactcacttctcgattgaattgagccgtaaatcatgctaat-cagacttagatagattagttaaggctaa 27421844  T
Q  311 tta 313  Q
    |||    
T  27421843 tta 27421841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 15 - 302
Target Start/End: Complemental strand, 27424721 - 27424432
Alignment:
Q  15 agaatgccatcattttcctcaacgcaagcatctagcaagggatttgaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttg 114  Q
    ||||||||||||||||| ||||| ||||||||||| || ||||| |||||||||||||||||||||||||| |||||||| |||  |||||| |||||||    
T  27424721 agaatgccatcattttcgtcaacacaagcatctagtaaaggattcgaagtcccaaaaggctatctcgcagtctatgttggagatcaaatgaggcggtttg 27424622  T
Q  115 tgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaat 214  Q
    |||||||| ||||||||||||||||||| | |||||||||||| ||||||||| | |||||||||| ||||||||||||||| ||||||||||| || ||    
T  27424621 tgattccagtatcatacttgaaccaaccttcatttcaagaattgctaaatcaatctgaagaagaatatggatatgatcatccaatgggtggtcttaccat 27424522  T
Q  215 tccttgcggcgaggatgaattcctaaatcttacttctcgcttgaattgagctctag--atcatgctaatggagatttagatagattagtt 302  Q
    ||| ||| ||||||||||||||| ||| || ||||||||| ||||||||||| |||  ||||||||||| |||||| | |||||||||||    
T  27424521 tccgtgcagcgaggatgaattccgaaacctcacttctcgcatgaattgagctgtagatatcatgctaatagagattaatatagattagtt 27424432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 15 - 298
Target Start/End: Complemental strand, 27419278 - 27418996
Alignment:
Q  15 agaatgccatcattttcctcaacgcaagcatctagcaagggatttgaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttg 114  Q
    ||||||||||||||||||  ||| ||||   ||  ||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| |    
T  27419278 agaatgccatcattttccaaaacacaagagactgccaagggacttgaagtcccaaaaggctatctcgcagtctatgttggagatagaatgaggcggttcg 27419179  T
Q  115 tgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaat 214  Q
    |||||||| ||||||| |||| ||| ||||  ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||    
T  27419178 tgattccagtatcatatttgagccagccatcgtttcaagaattactaaatcaatcagaagaagaatttggatatgatcatccaatgggtggtcttacaat 27419079  T
Q  215 tccttgcggcgaggatgaattcctaaatcttacttctcgcttgaattgagctctagatcatgctaatggagatttagatagatt 298  Q
    ||||||||| || ||||  ||| || | || ||||||||||| || |||  | || |||||||||||||||||| |||||||||    
T  27419078 tccttgcggtgaagatgctttcttacaactcacttctcgctt-aagtgatttgtaaatcatgctaatggagattaagatagatt 27418996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 59 - 217
Target Start/End: Complemental strand, 27556542 - 27556384
Alignment:
Q  59 tgaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaatta 158  Q
    ||||||||||||||||||||||||||| |||||||| || | |||||  || |||||||||||  | ||||  ||||||||||| | |||||||||||||    
T  27556542 tgaagtcccaaaaggctatctcgcagtttatgttggagaaaaaatgaagcgatttgtgattcccatttcattattgaaccaaccttcatttcaagaatta 27556443  T
Q  159 ctaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattcc 217  Q
    ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  27556442 ctacatcaagcagaagaagaatttggatatgatcattctatgggtggtctcacaattcc 27556384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 60 - 221
Target Start/End: Complemental strand, 27479045 - 27478884
Alignment:
Q  60 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 159  Q
    ||||| ||||| |||||| | |||||||||||||| || | |  ||  ||||||||  | ||| |||||||||||||||||||||| ||||||||||| |    
T  27479045 gaagttccaaagggctatgttgcagtgtatgttggagagaaacagaagcggtttgttgtcccaatatcatacttgaaccaaccattgtttcaagaattgc 27478946  T
Q  160 taaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 221  Q
    || ||||||| |||||||||||||||||||||||||| |||||||| ||||| |||||||||    
T  27478945 tacatcaagcggaagaagaatttggatatgatcatcccatgggtggcctcaccattccttgc 27478884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 60 - 221
Target Start/End: Complemental strand, 27486105 - 27485944
Alignment:
Q  60 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 159  Q
    ||||| ||||| |||||| | |||||||||||||| || | |  ||  ||||||||  | ||| |||||||||||||||||||||| ||||||||||| |    
T  27486105 gaagttccaaagggctatgttgcagtgtatgttggagagaaacagaagcggtttgttgtcccaatatcatacttgaaccaaccattgtttcaagaattgc 27486006  T
Q  160 taaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 221  Q
    || ||||||| |||||||||||||||||||||||||| |||||||| ||||| |||||||||    
T  27486005 tacatcaagcggaagaagaatttggatatgatcatcccatgggtggcctcaccattccttgc 27485944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 108 - 221
Target Start/End: Original strand, 27506724 - 27506837
Alignment:
Q  108 cggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtc 207  Q
    ||||||||||| ||| |||||||||| ||||||||||| ||||||||||| ||| ||||||| |||||||||||||||||||||||||| |||||||| |    
T  27506724 cggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatcaagcggaagaagaatttggatatgatcatcccatgggtggac 27506823  T
Q  208 tcacaattccttgc 221  Q
    |||| |||||||||    
T  27506824 tcaccattccttgc 27506837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 107 - 221
Target Start/End: Original strand, 27412689 - 27412803
Alignment:
Q  107 acggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggt 206  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||| ||| | | |||||| |||||||| ||||||||||||||||| ||||||||     
T  27412689 acggtttgtgatcccaatatcatacttgaaccaaccattatttcaagacttattgagtcaagctgaagaagagtttggatatgatcatccaatgggtggc 27412788  T
Q  207 ctcacaattccttgc 221  Q
    ||||| |||||||||    
T  27412789 ctcaccattccttgc 27412803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 66 - 263
Target Start/End: Complemental strand, 27513932 - 27513735
Alignment:
Q  66 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 165  Q
    |||||||| ||||| ||||||||||| || || | |||||  ||||||||||| ||| ||||||||||||||||| | |  || ||||||||  | || |    
T  27513932 ccaaaaggatatctagcagtgtatgtaggagagaaaatgaagcggtttgtgatcccaatatcatacttgaaccaaacctcgttccaagaattgttgaacc 27513833  T
Q  166 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgcggcgaggatgaattcctaaatcttacttctcgcttgaattga 263  Q
    |||| |||||| ||| || |||||||||||| |||||||||||||| ||||||||| | || || | |||| || || | ||||||||||||||||||    
T  27513832 aagctgaagaacaatatgaatatgatcatccaatgggtggtctcactattccttgcagagaagaagtattcttagatatcacttctcgcttgaattga 27513735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 109 - 221
Target Start/End: Complemental strand, 27444907 - 27444795
Alignment:
Q  109 ggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtct 208  Q
    |||||||||| ||| |||||||||||| |||| ||| ||||||||||||| | |||||||| || ||| |||| |||||||| ||||| |||||||||||    
T  27444907 ggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtct 27444808  T
Q  209 cacaattccttgc 221  Q
    |||||||||||||    
T  27444807 cacaattccttgc 27444795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 109 - 260
Target Start/End: Complemental strand, 27431261 - 27431110
Alignment:
Q  109 ggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtct 208  Q
    |||||||||| ||| ||||||||||||||||||| | ||||||||||||  | |||||||| || ||| ||||||||||||| ||||| |  ||||||||    
T  27431261 ggtttgtgatcccaatatcatacttgaaccaaccgtcatttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaaccggtggtct 27431162  T
Q  209 cacaattccttgcggcgaggatgaattcctaaatcttacttctcgcttgaat 260  Q
    ||||||||||||| | || || |  ||| ||||| |||||||||| ||||||    
T  27431161 cacaattccttgcagagaagacgttttcttaaatattacttctcgtttgaat 27431110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 124 - 221
Target Start/End: Complemental strand, 27563444 - 27563347
Alignment:
Q  124 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 221  Q
    ||||||||||||||||| |||| |||||||| || || | |||||| |||||||| ||||||||||||||||| |||||||| |||||||||||||||    
T  27563444 tatcatacttgaaccaaacattgtttcaagatttgctgagtcaagccgaagaagagtttggatatgatcatccaatgggtggcctcacaattccttgc 27563347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 66 - 221
Target Start/End: Original strand, 27486967 - 27487122
Alignment:
Q  66 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 165  Q
    ||||| || ||||| |||||||| || || || | |||||  ||||||||||| || ||||||||||| ||||||||||  |||||||||||  | || |    
T  27486967 ccaaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgatccctttatcatacttaaaccaaccatcgtttcaagaattgttgaacc 27487066  T
Q  166 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 221  Q
    |||| |||||| |||||| |||||||||||| ||||||||||| || |||||||||    
T  27487067 aagctgaagaacaatttgaatatgatcatccaatgggtggtcttactattccttgc 27487122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 111 - 221
Target Start/End: Original strand, 27585717 - 27585827
Alignment:
Q  111 tttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctca 210  Q
    |||||||| ||  |||||||||||||||||||||| |||||||| ||  | | |||||| |||||||| ||||||||||||||||| ||||| |||||||    
T  27585717 tttgtgatccccgtatcatacttgaaccaaccattgtttcaagatttgatgagtcaagccgaagaagagtttggatatgatcatccaatgggaggtctca 27585816  T
Q  211 caattccttgc 221  Q
    | |||||||||    
T  27585817 ccattccttgc 27585827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 131 - 221
Target Start/End: Original strand, 27595434 - 27595524
Alignment:
Q  131 cttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 221  Q
    |||||||| ||||||||||||||||||||||| |||||||||| |||| |||||||   ||||||| ||||||||||| ||||||||||||    
T  27595434 cttgaaccgaccattatttcaagaattactaagtcaagcagaaaaagagtttggattcaatcatcccatgggtggtcttacaattccttgc 27595524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 64 - 221
Target Start/End: Complemental strand, 27559398 - 27559241
Alignment:
Q  64 tcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaa 163  Q
    |||||||||||||||||||||| |||||||| || | |||||   | ||| |||||||  | ||||  ||||| ||| | | ||||||| | ||| |||     
T  27559398 tcccaaaaggctatctcgcagtttatgttggagacaaaatgaagagatttctgattcctatttcattattgaatcaatcttcatttcaatagttattaag 27559299  T
Q  164 tcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 221  Q
     ||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  27559298 ccaatcagaagaagagtttggatatgatcatccaatgggtggtctcacaattccttgc 27559241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 108 - 260
Target Start/End: Original strand, 27425838 - 27425990
Alignment:
Q  108 cggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtc 207  Q
    |||| |||||| ||| ||||||||||||||||||||| ||||||||| ||| | | ||||   || ||||| ||||||||||||||||| |||||||| |    
T  27425838 cggtatgtgatcccaatatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagtttggatatgatcatcccatgggtggcc 27425937  T
Q  208 tcacaattccttgcggcgaggatgaattcctaaatcttacttctcgcttgaat 260  Q
    |||| |||||||||  |||||||| ||| | | || | || ||||||||||||    
T  27425938 tcaccattccttgcaccgaggatgtatttcaacatatgacatctcgcttgaat 27425990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 109 - 217
Target Start/End: Original strand, 27557516 - 27557624
Alignment:
Q  109 ggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtct 208  Q
    |||||||||| ||| | |||||||| |||||||||| |||||||||||| || |||||||| || ||| |||||| ||||| |||||| |||||||||||    
T  27557516 ggtttgtgatcccaatgtcatacttaaaccaaccatcatttcaagaattgctgaatcaagctgaggaacaatttgaatatgttcatccaatgggtggtct 27557615  T
Q  209 cacaattcc 217  Q
    ||| |||||    
T  27557616 cactattcc 27557624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 66 - 221
Target Start/End: Complemental strand, 27526268 - 27526113
Alignment:
Q  66 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 165  Q
    ||||| || ||||| |||||||||||||| || | |||||  ||||||||||||||  ||||||||||||||||| | | ||| ||||||||  | |  |    
T  27526268 ccaaagggatatctagcagtgtatgttggagagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaattgttgagcc 27526169  T
Q  166 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 221  Q
    |||| || ||| |||||| |||||||||||| | |||||||||||| |||||||||    
T  27526168 aagctgaggaacaatttgaatatgatcatccaacgggtggtctcactattccttgc 27526113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 66 - 221
Target Start/End: Original strand, 27479885 - 27480040
Alignment:
Q  66 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 165  Q
    |||||||||||||| ||||| || || || || | |||||  || |||||||||||  ||||||||||||||||| ||| ||| ||| | ||  | || |    
T  27479885 ccaaaaggctatctagcagtatacgtaggagagaaaatgaagcgttttgtgattcctgtatcatacttgaaccaaacatcattccaaaagttgttgaacc 27479984  T
Q  166 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 221  Q
    |||| || ||| |||||| |||||||||||| |||||||||||||| |||||||||    
T  27479985 aagctgaggaacaatttgaatatgatcatccaatgggtggtctcaccattccttgc 27480040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 101 - 220
Target Start/End: Original strand, 27501336 - 27501455
Alignment:
Q  101 aatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatg 200  Q
    ||||| |||||||||||| ||| |||||||||| ||||||||||| |||||||| ||  | || ||||| || ||| |||||| ||| |||||||| | |    
T  27501336 aatgaaacggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagacttgttgaaccaagccgaggaacaatttgaatacgatcatccaacg 27501435  T
Q  201 ggtggtctcacaattccttg 220  Q
    ||||||||||| ||||||||    
T  27501436 ggtggtctcactattccttg 27501455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 66 - 221
Target Start/End: Complemental strand, 27505858 - 27505703
Alignment:
Q  66 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 165  Q
    ||||| || ||||| |||||||| || || || | |||||  ||||||||||||||  ||||||||||||||||| | | ||| ||||||||  | || |    
T  27505858 ccaaaggggtatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaattgttgaacc 27505759  T
Q  166 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 221  Q
    |||| || ||| |||||| |||||| ||||| |||||||||||||| |||||||||    
T  27505758 aagctgaggaacaatttgaatatgaccatccaatgggtggtctcactattccttgc 27505703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 60 - 202
Target Start/End: Original strand, 27527139 - 27527281
Alignment:
Q  60 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 159  Q
    ||||| ||||| |||||||| || ||||||||||| |||| |  || |||||||||||| ||| ||||| |||| ||||||||||  |||| ||| || |    
T  27527139 gaagtaccaaagggctatcttgcggtgtatgttggagataaacagaaacggtttgtgatcccaatatcacacttaaaccaaccatcgtttctagagttgc 27527238  T
Q  160 taaatcaagcagaagaagaatttggatatgatcatcctatggg 202  Q
    | | |||||| || ||||| ||||||||||||||||| |||||    
T  27527239 tgagtcaagctgaggaagagtttggatatgatcatcccatggg 27527281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 66 - 223
Target Start/End: Original strand, 27498399 - 27498556
Alignment:
Q  66 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 165  Q
    ||||| || ||||| ||||| |||||||| ||   ||||| ||| |||||||| ||  |||||||||||||||||||||  || ||||| ||  | || |    
T  27498399 ccaaagggatatctagcagtatatgttggagaggaaatgaaacgttttgtgatccctatatcatacttgaaccaaccatcgttccaagacttgttgaacc 27498498  T
Q  166 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgcgg 223  Q
    |||| || ||| |||| | |||||||||||| |||||||||||||| |||||||||||    
T  27498499 aagccgaggaacaattcgaatatgatcatccaatgggtggtctcactattccttgcgg 27498556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 124 - 221
Target Start/End: Original strand, 27503964 - 27504061
Alignment:
Q  124 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 221  Q
    ||||||||||||||||||| | ||||||||| ||  | | |||||| || ||||| ||||||||||||||||| |||||||| ||||| |||||||||    
T  27503964 tatcatacttgaaccaaccttcatttcaagacttgttgagtcaagccgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttgc 27504061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 66 - 221
Target Start/End: Original strand, 27476671 - 27476826
Alignment:
Q  66 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 165  Q
    ||||| || ||||| |||||||||||||| || | |||||  ||||||||||||||  ||||||||||||||||| | | ||| |||||| | || |  |    
T  27476671 ccaaagggatatctagcagtgtatgttggtgagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaactgctgagcc 27476770  T
Q  166 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 221  Q
    ||   || ||| |||||| |||||||||||| ||||||||||| || |||||||||    
T  27476771 aaagtgaggaacaatttgaatatgatcatccaatgggtggtctaactattccttgc 27476826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 137 - 220
Target Start/End: Original strand, 27554364 - 27554447
Alignment:
Q  137 ccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttg 220  Q
    ||||||||  ||||||||||| || |||||||| || ||| ||||||||||||||||||| | |||| ||||||||||||||||    
T  27554364 ccaaccatcgtttcaagaattgctgaatcaagctgaggaacaatttggatatgatcatccaacgggtagtctcacaattccttg 27554447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 111 - 221
Target Start/End: Original strand, 27415650 - 27415760
Alignment:
Q  111 tttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctca 210  Q
    |||||||| ||  |||||||||||||||||||||  |||||||| ||  | | |||||| || ||||| ||||||||||||||| | |||||||| ||||    
T  27415650 tttgtgatccccatatcatacttgaaccaaccatcgtttcaagacttgttgagtcaagctgaggaagagtttggatatgatcattccatgggtggcctca 27415749  T
Q  211 caattccttgc 221  Q
    | |||||||||    
T  27415750 ccattccttgc 27415760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 124 - 221
Target Start/End: Complemental strand, 27468425 - 27468328
Alignment:
Q  124 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 221  Q
    |||||||||| |||||||| | ||||||||| ||  | | |||| | || ||||||||||||||||||||||| |||||||| ||||| |||||||||    
T  27468425 tatcatacttaaaccaaccttcatttcaagacttgttgagtcaatccgaggaagaatttggatatgatcatcccatgggtggcctcaccattccttgc 27468328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 124 - 221
Target Start/End: Complemental strand, 27475677 - 27475580
Alignment:
Q  124 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 221  Q
    ||||||||||||| ||||| | ||||||||| ||  | | |||||| || ||||| ||||||||||||||||| |||||||| ||||| |||||||||    
T  27475677 tatcatacttgaatcaaccttcatttcaagacttgttgagtcaagccgaggaagagtttggatatgatcatcccatgggtggcctcaccattccttgc 27475580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 124 - 217
Target Start/End: Original strand, 27524566 - 27524659
Alignment:
Q  124 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattcc 217  Q
    ||||||| ||||||||||| | ||||||||| ||  | |||||||| || ||||| ||||||||||||||||| |||||||| ||||| |||||    
T  27524566 tatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattcc 27524659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 27490004 - 27490096
Alignment:
Q  126 tcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattcct 218  Q
    |||||||| ||| |||||| ||||||||| ||  | |||||||| || ||||| ||||||||||||||||| |||||||| ||||| ||||||    
T  27490004 tcatacttaaacaaaccatcatttcaagatttgttgaatcaagccgaggaagagtttggatatgatcatccaatgggtggcctcaccattcct 27490096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 124 - 220
Target Start/End: Original strand, 27514933 - 27515029
Alignment:
Q  124 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttg 220  Q
    ||||||||||||| ||||| | ||||||||| ||  | | |||| | || ||||||||||||||||||||||| |||||||| ||||| ||||||||    
T  27514933 tatcatacttgaatcaaccttcatttcaagacttgttgagtcaatccgaggaagaatttggatatgatcatcccatgggtggcctcaccattccttg 27515029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 59 - 221
Target Start/End: Original strand, 27446124 - 27446286
Alignment:
Q  59 tgaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaatta 158  Q
    ||||||||||||||||||||| || || |||||||| || | |||||  || ||||||||||||   ||||  ||||| ||||| | ||||||||| |      
T  27446124 tgaagtcccaaaaggctatcttgcggtttatgttggagaaaaaatgaagcgatttgtgattccaacttcattattgaatcaaccttcatttcaagagtcg 27446223  T
Q  159 ctaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 221  Q
     |||  ||| |||||||||| |||| |||||||||||  |||| ||||||| | |||||||||    
T  27446224 ttaagccaatcagaagaagagtttgaatatgatcatcgaatggatggtctctcgattccttgc 27446286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 124 - 221
Target Start/End: Original strand, 27420450 - 27420547
Alignment:
Q  124 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 221  Q
    |||||||||||| |||||| | ||||||||  || || | |||||  || ||||| ||||||||||||||||| |||||||| ||||| |||||||||    
T  27420450 tatcatacttgagccaaccttcatttcaaggcttgctgagtcaagttgaggaagagtttggatatgatcatcccatgggtggcctcaccattccttgc 27420547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 60 - 221
Target Start/End: Complemental strand, 27497484 - 27497323
Alignment:
Q  60 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 159  Q
    ||||| ||||| |||||| | |||||||||||||| |||| |   |  ||||||||||| ||  | |||||||| ||||||||||| |||||| | ||      
T  27497484 gaagttccaaagggctatgttgcagtgtatgttggagataaacaaaagcggtttgtgatccctatctcatacttaaaccaaccattgtttcaatatttgt 27497385  T
Q  160 taaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 221  Q
    | | |||||| || ||||| ||||||||||||||||| |  ||||| ||||| |||||||||    
T  27497384 tgagtcaagctgaggaagagtttggatatgatcatcccacaggtggcctcaccattccttgc 27497323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 111 - 260
Target Start/End: Complemental strand, 27566062 - 27565913
Alignment:
Q  111 tttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctca 210  Q
    |||||||| ||  |||||||| ||||||||||||| |||||||| || || |  ||||  || |||||   ||||||||||||||| |||||||| ||||    
T  27566062 tttgtgatccccatatcatacctgaaccaaccattgtttcaagacttgctgatacaagttgaggaagagcatggatatgatcatccaatgggtggcctca 27565963  T
Q  211 caattccttgcggcgaggatgaattcctaaatcttacttctcgcttgaat 260  Q
    | |||||||| ||||| ||||  |||| | || | |||||| ||||||||    
T  27565962 ccattccttgtggcgaagatgtcttccaacatataacttcttgcttgaat 27565913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 124 - 221
Target Start/End: Complemental strand, 27570147 - 27570050
Alignment:
Q  124 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 221  Q
    |||||||||| | |||||| | ||||||||| || || | |||||| || ||||| || |||||||||||||| |||||||| ||||| |||||||||    
T  27570147 tatcatacttaagccaaccttcatttcaagacttgctgagtcaagctgaggaagagttcggatatgatcatcccatgggtggcctcaccattccttgc 27570050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 108 - 220
Target Start/End: Complemental strand, 27502921 - 27502809
Alignment:
Q  108 cggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtc 207  Q
    ||||||||||||||| | ||||| ||||| ||| | | ||||||||| || || |  ||||| |  ||||||||||||||||| ||||| ||||||||||    
T  27502921 cggtttgtgattccaatgtcatatttgaatcaaacttcatttcaagacttgctgagccaagctgtggaagaatttggatatgaccatccaatgggtggtc 27502822  T
Q  208 tcacaattccttg 220  Q
    | || ||||||||    
T  27502821 ttactattccttg 27502809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 126 - 221
Target Start/End: Original strand, 17970343 - 17970438
Alignment:
Q  126 tcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 221  Q
    ||||||||||||||| | | ||||||| | || || | ||  ||||| |||||||| ||||| |||||||| |||||||| |||||||||||||||    
T  17970343 tcatacttgaaccaaacttcatttcaatacttgctgagtcgggcagaggaagaattcggatacgatcatccaatgggtggcctcacaattccttgc 17970438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 174 - 220
Target Start/End: Complemental strand, 27507861 - 27507815
Alignment:
Q  174 gaagaatttggatatgatcatcctatgggtggtctcacaattccttg 220  Q
    ||||||||||||||||| ||||| ||||||||||| |||||||||||    
T  27507861 gaagaatttggatatgaccatccaatgggtggtcttacaattccttg 27507815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 27600642 - 27600692
Alignment:
Q  171 gaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 221  Q
    |||||||||||||| ||  ||||||| ||||||||||||||||||||||||    
T  27600642 gaagaagaatttggttacaatcatccaatgggtggtctcacaattccttgc 27600692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 124 - 221
Target Start/End: Original strand, 27423264 - 27423361
Alignment:
Q  124 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 221  Q
    ||||||||||||||||||| | ||||||||||||  | | |||||| || ||||| ||||| ||  ||||||| |||||||| |||||  ||||||||    
T  27423264 tatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggttacaatcatcccatgggtggcctcaccgttccttgc 27423361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 27473988 - 27474033
Alignment:
Q  178 aatttggatatgatcatcctatgggtggtctcacaattccttgcgg 223  Q
    |||||| |||||||||||| |||||||||||||| |||||||||||    
T  27473988 aatttgaatatgatcatccaatgggtggtctcaccattccttgcgg 27474033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 221
Target Start/End: Original strand, 27460574 - 27460617
Alignment:
Q  178 aatttggatatgatcatcctatgggtggtctcacaattccttgc 221  Q
    |||||| |||||||||||| |||||||||||||| |||||||||    
T  27460574 aatttgaatatgatcatccaatgggtggtctcaccattccttgc 27460617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 221
Target Start/End: Original strand, 27466917 - 27466960
Alignment:
Q  178 aatttggatatgatcatcctatgggtggtctcacaattccttgc 221  Q
    |||||| |||||||||||| |||||||||||||| |||||||||    
T  27466917 aatttgaatatgatcatccaatgggtggtctcactattccttgc 27466960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 221
Target Start/End: Original strand, 27469444 - 27469599
Alignment:
Q  66 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 165  Q
    ||||| || ||||| |||||||| || || || | |||||  ||||||||||| ||  ||||||| ||||| ||| ||| ||| |||||| |  | |  |    
T  27469444 ccaaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgatccctatatcatatttgaagcaaacatcattacaagaactgttgagcc 27469543  T
Q  166 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 221  Q
    |||| |||||| |||||| |||||| ||||| ||||||||||| || |||||||||    
T  27469544 aagctgaagaacaatttgaatatgaacatccaatgggtggtctaactattccttgc 27469599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 221
Target Start/End: Original strand, 27495620 - 27495675
Alignment:
Q  166 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 221  Q
    |||| |||||||| ||||||| | ||||||| |||||||||||||| |||||||||    
T  27495620 aagctgaagaagagtttggatttaatcatccaatgggtggtctcaccattccttgc 27495675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 217
Target Start/End: Original strand, 27508896 - 27508987
Alignment:
Q  126 tcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattcc 217  Q
    ||||| ||||||||||| | ||||||||| ||  | ||||| || || ||||| ||||||||||||||||| | |||||| ||||| |||||    
T  27508896 tcatatttgaaccaaccttcatttcaagacttgttgaatcaggctgaggaagagtttggatatgatcatccaacgggtggcctcaccattcc 27508987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 217
Target Start/End: Original strand, 27577407 - 27577453
Alignment:
Q  171 gaagaagaatttggatatgatcatcctatgggtggtctcacaattcc 217  Q
    ||||||||||||||||   |||| |||||||||||||||||||||||    
T  27577407 gaagaagaatttggattcaatcaccctatgggtggtctcacaattcc 27577453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 27502192 - 27502136
Alignment:
Q  165 caagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 221  Q
    ||||| || ||| |||||| |||||||||||| ||||||||||| || |||||||||    
T  27502192 caagctgaggaacaatttgaatatgatcatccaatgggtggtctaactattccttgc 27502136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 66 - 221
Target Start/End: Complemental strand, 1756913 - 1756758
Alignment:
Q  66 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 165  Q
    ||||| |||||||| |||||| ||||||| || | |  ||  ||||||||||| ||| |||||||||||||||||||||  |||||| | ||  | | ||    
T  1756913 ccaaagggctatcttgcagtgaatgttggagagaaacagaagcggtttgtgatcccaatatcatacttgaaccaaccatcgtttcaatacttgttgagtc 1756814  T
Q  166 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 221  Q
    |||| ||||||||||||||||||||||| || |||||||| ||||| |||||||||    
T  1756813 aagctgaagaagaatttggatatgatcaccccatgggtggcctcaccattccttgc 1756758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 51 - 250
Target Start/End: Complemental strand, 1756166 - 1755967
Alignment:
Q  51 aagggatttgaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttc 150  Q
    |||||||||||||||   |||||||| || ||||| |||||||  ||| ||||||  | | | |||||| || ||||||||||||| ||||| | |||||    
T  1756166 aagggatttgaagtctagaaaggctaccttgcagtctatgttgaagatcgaatgaagcagatagtgatttcaatatcatacttgaatcaaccttaatttc 1756067  T
Q  151 aagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgcggcgaggatgaattcctaaatcttacttc 250  Q
    |||||||||||   |||||||||||  ||||  ||||||||||||| |  | ||||||||||||||| |||   ||||||||| || ||||  |||||||    
T  1756066 aagaattactatgccaagcagaagagcaattcagatatgatcatccaactgttggtctcacaattccatgcaaggaggatgaaatcttaaactttacttc 1755967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 66 - 220
Target Start/End: Complemental strand, 1754397 - 1754243
Alignment:
Q  66 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 165  Q
    |||||||| ||||| || || |||||||| ||   |||||  ||||||||||| ||  ||||||||||||||||| | | ||||||| |||| |||||      
T  1754397 ccaaaaggatatctagctgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaattgctaaaca 1754298  T
Q  166 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttg 220  Q
    || | || ||| | |||| |||||||||||| |||||||||||||| ||||||||    
T  1754297 aatctgaggaacagtttgaatatgatcatccgatgggtggtctcactattccttg 1754243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 66 - 221
Target Start/End: Original strand, 55084770 - 55084925
Alignment:
Q  66 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 165  Q
    |||||||| | ||| |||||||||||||| || | |||||  ||||||||||| ||  | || |||||||||||||||| ||||||||| ||  | | ||    
T  55084770 ccaaaagggtgtcttgcagtgtatgttggagagaaaatgaagcggtttgtgatccctatgtcttacttgaaccaaccatcatttcaagacttgttgagtc 55084869  T
Q  166 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 221  Q
      || || |||||||||||||| |||||||| |||||||| |||||||||||||||    
T  55084870 gggcggaggaagaatttggatacgatcatccaatgggtggcctcacaattccttgc 55084925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 43 - 217
Target Start/End: Original strand, 50913457 - 50913631
Alignment:
Q  43 catctagcaagggatttgaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaacc 142  Q
    |||||||||| | | | |||||||||||||||||||| |||||||||||||| || | |||||   ||||  |||||||| |||||| ||||||  | ||    
T  50913457 catctagcaaagaagtggaagtcccaaaaggctatcttgcagtgtatgttggagagaaaatgaagaggttcttgattccaatatcattcttgaatgagcc 50913556  T
Q  143 attatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattcc 217  Q
     |||||||||||||| || |  ||||| ||||| |||||||| ||   |||||| ||||||||||| ||||||||    
T  50913557 tttatttcaagaattgcttagccaagctgaagaggaatttggctactgtcatccaatgggtggtcttacaattcc 50913631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 60 - 217
Target Start/End: Original strand, 38032260 - 38032417
Alignment:
Q  60 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 159  Q
    ||||| |||||||||||||| |||||||||||||| || | ||||||| ||||| |||||||| |||||| ||||||  | || |||||||||||||| |    
T  38032260 gaagttccaaaaggctatcttgcagtgtatgttggagagaaaatgagaaggtttatgattccagtatcattcttgaatgagcctttatttcaagaattgc 38032359  T
Q  160 taaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattcc 217  Q
    | |  ||| | ||||| ||||| || |||  |||||| ||||| ||||| ||||||||    
T  38032360 ttagccaatctgaagaggaattcggttattgtcatccaatgggcggtcttacaattcc 38032417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 60 - 217
Target Start/End: Original strand, 38035033 - 38035190
Alignment:
Q  60 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 159  Q
    ||||||||||||||| |||| || ||||||||||| || | |||| || ||||  |||||||| |||||| ||||||  | || |||||||||||||| |    
T  38035033 gaagtcccaaaaggccatcttgcggtgtatgttggagagaaaatgcgaaggttcatgattccaatatcattcttgaatgagcctttatttcaagaattgc 38035132  T
Q  160 taaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattcc 217  Q
    | |  ||||| ||||| ||||| || |||  |||||| ||||||||||||||||||||    
T  38035133 ttagccaagctgaagaggaattcggttattgtcatccaatgggtggtctcacaattcc 38035190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 60 - 217
Target Start/End: Original strand, 38038525 - 38038682
Alignment:
Q  60 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 159  Q
    ||||||||||||||| |||| |||||||||||||| || | ||||||| ||||  |||||||| |||||| ||||||  | || |||||||||||||| |    
T  38038525 gaagtcccaaaaggccatcttgcagtgtatgttggagagaaaatgagaaggttcatgattccaatatcattcttgaatgagcctttatttcaagaattgc 38038624  T
Q  160 taaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattcc 217  Q
    | |  ||||| ||||| ||||| || |||  |||||| ||||| ||||| ||||||||    
T  38038625 ttagccaagctgaagaggaattcggttattgtcatccaatgggaggtcttacaattcc 38038682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 60 - 217
Target Start/End: Original strand, 38027433 - 38027590
Alignment:
Q  60 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 159  Q
    ||||| ||||||||| |||| |||||||||||||| || | ||||||| ||||| |||||||  |||||| ||||||  | || |||||||||||||| |    
T  38027433 gaagttccaaaaggccatcttgcagtgtatgttggagagaaaatgagaaggtttatgattcccgtatcattcttgaatgagcctttatttcaagaattgc 38027532  T
Q  160 taaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattcc 217  Q
    | |  ||| | ||||| ||||| || |||  |||||| ||||||||||| ||||||||    
T  38027533 ttagccaatctgaagaggaattcggttattgtcatccaatgggtggtcttacaattcc 38027590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 108 - 221
Target Start/End: Original strand, 38043929 - 38044042
Alignment:
Q  108 cggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtc 207  Q
    ||||||||||| ||  | ||||||||||| ||| | |  |||||||| || || | ||||||||| ||||||||||||||||||||||| ||||| || |    
T  38043929 cggtttgtgatccctatgtcatacttgaatcaaacttcgtttcaagacttgctgagtcaagcagaggaagaatttggatatgatcatccaatgggcggcc 38044028  T
Q  208 tcacaattccttgc 221  Q
    ||||||||||||||    
T  38044029 tcacaattccttgc 38044042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 66 - 221
Target Start/End: Complemental strand, 38025031 - 38024876
Alignment:
Q  66 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 165  Q
    ||||| |||||||| ||||| |||||||| ||   |||||  |||||||| || ||  | ||||||||||||||| | |  |||||| | ||| | | ||    
T  38025031 ccaaagggctatcttgcagtatatgttggagagcaaatgaagcggtttgttatccccatgtcatacttgaaccaagcttcctttcaaaacttattgagtc 38024932  T
Q  166 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 221  Q
    ||||||| |||||||||||||||||||| || |||||||| ||||| |||||||||    
T  38024931 aagcagaggaagaatttggatatgatcacccaatgggtggcctcacgattccttgc 38024876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 66 - 221
Target Start/End: Complemental strand, 38031483 - 38031328
Alignment:
Q  66 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 165  Q
    ||||| |||||||| ||||| |||||||| ||   |||||  |||||||| || ||  | ||||||||||||||| | |  |||||| | ||| | | ||    
T  38031483 ccaaagggctatcttgcagtatatgttggagagcaaatgaagcggtttgttatccccatgtcatacttgaaccaagcttcctttcaaaacttattgagtc 38031384  T
Q  166 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 221  Q
    ||||||| |||||||||||||||||||| || |||||||| ||||| |||||||||    
T  38031383 aagcagaggaagaatttggatatgatcacccaatgggtggcctcacgattccttgc 38031328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 126 - 221
Target Start/End: Original strand, 50910004 - 50910099
Alignment:
Q  126 tcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 221  Q
    ||||||||||||||| | | ||||||| | ||  | |||||||  || ||||||||||||||||||||||| |||||||| |||||||||||||||    
T  50910004 tcatacttgaaccaagcttcatttcaaaacttgttgaatcaagtggaggaagaatttggatatgatcatccaatgggtggcctcacaattccttgc 50910099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 66 - 221
Target Start/End: Complemental strand, 50912025 - 50911870
Alignment:
Q  66 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 165  Q
    ||||| |||||||| || || |||||||| || |  |||| |||||||||||| ||    ||||||||||||||| | | ||||||| | ||  | | ||    
T  50912025 ccaaagggctatcttgcggtatatgttggagacaagatgaaacggtttgtgatccccaagtcatacttgaaccaagcttcatttcaaaacttgttgagtc 50911926  T
Q  166 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 221  Q
    ||||||| |||||||||||||||||||| || |||||||| || ||||||||||||    
T  50911925 aagcagaggaagaatttggatatgatcacccaatgggtggcctaacaattccttgc 50911870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 48840759 - 48840713
Alignment:
Q  175 aagaatttggatatgatcatcctatgggtggtctcacaattccttgc 221  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||    
T  48840759 aagaatttggatatgatcatccaatgggtggcctcacaattccttgc 48840713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 164 - 221
Target Start/End: Complemental strand, 38028824 - 38028767
Alignment:
Q  164 tcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 221  Q
    |||||| || ||||||||||||||||| ||||| ||||| || |||||||||||||||    
T  38028824 tcaagccgaggaagaatttggatatgaccatccaatgggcggcctcacaattccttgc 38028767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 221
Target Start/End: Complemental strand, 50904885 - 50904793
Alignment:
Q  129 tacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 221  Q
    |||||||||||| | | ||||||||| ||  | | || |||||| || ||||| |||||||||||||| |||||||| ||||| |||||||||    
T  50904885 tacttgaaccaaacttcatttcaagacttgttgagtcgagcagaggatgaattcggatatgatcatccaatgggtggcctcaccattccttgc 50904793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 221
Target Start/End: Complemental strand, 38036949 - 38036794
Alignment:
Q  66 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 165  Q
    ||||| |||||||| |||||||| ||||| ||   ||||| |||||||||  | ||  |  |||||||||||||| | | ||||||| | ||  | | ||    
T  38036949 ccaaagggctatcttgcagtgtacgttggagagcaaatgaaacggtttgttgtccccatgccatacttgaaccaagcttcatttcaaaatttgttgagtc 38036850  T
Q  166 aagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 221  Q
    |||| || |||||||| |||||||| ||||| ||||| || |||||||||||||||    
T  38036849 aagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccttgc 38036794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 221
Target Start/End: Complemental strand, 38040139 - 38040082
Alignment:
Q  164 tcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 221  Q
    |||||| || |||||||| |||||||| ||||| ||||| || |||||||||||||||    
T  38040139 tcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccttgc 38040082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 60 - 217
Target Start/End: Original strand, 21608235 - 21608392
Alignment:
Q  60 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 159  Q
    ||||| |||||||||||||| |||||||||||||| || | ||||||| ||||  |||||||| |||||| ||||||  | || |||||||||||||| |    
T  21608235 gaagttccaaaaggctatcttgcagtgtatgttggagagaaaatgagaaggttcatgattccaatatcattcttgaatgagcctttatttcaagaattgc 21608334  T
Q  160 taaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattcc 217  Q
    | |  ||||| ||||| ||||| || |||  |||||| ||||| ||||| ||||||||    
T  21608335 ttagccaagctgaagaggaattcggttattgtcatccaatgggaggtcttacaattcc 21608392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 147 - 221
Target Start/End: Original strand, 21634608 - 21634682
Alignment:
Q  147 tttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 221  Q
    |||||||| || || | ||||||||| ||||||||||||||||||||||  ||||| ||  ||||||||||||||    
T  21634608 tttcaagacttgctgagtcaagcagaggaagaatttggatatgatcatcgaatgggcggcttcacaattccttgc 21634682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 164 - 221
Target Start/End: Complemental strand, 21607354 - 21607297
Alignment:
Q  164 tcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 221  Q
    ||||||||| |||||||||||||||||||| || |||||||| |||||  ||||||||    
T  21607354 tcaagcagaggaagaatttggatatgatcacccaatgggtggcctcacggttccttgc 21607297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 126 - 221
Target Start/End: Original strand, 3073613 - 3073708
Alignment:
Q  126 tcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgc 221  Q
    ||||||||||||||| | | ||||||| | || || | ||  ||||| |||||||| ||||| |||||||| |||||||| |||||||||||||||    
T  3073613 tcatacttgaaccaaacttcatttcaatacttgctgagtcgggcagaggaagaattcggatacgatcatccaatgggtggcctcacaattccttgc 3073708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University