View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2983_low_4 (Length: 450)

Name: NF2983_low_4
Description: NF2983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2983_low_4
NF2983_low_4
[»] chr5 (14 HSPs)
chr5 (338-440)||(39060339-39060441)
chr5 (339-440)||(5357735-5357836)
chr5 (329-434)||(30437647-30437752)
chr5 (364-436)||(42818996-42819069)
chr5 (375-436)||(4195025-4195088)
chr5 (367-423)||(41594793-41594849)
chr5 (362-429)||(858435-858502)
chr5 (349-435)||(7311110-7311194)
chr5 (353-435)||(6172912-6172994)
chr5 (339-434)||(5147413-5147509)
chr5 (337-436)||(38978997-38979097)
chr5 (338-435)||(42211423-42211520)
chr5 (374-435)||(42575591-42575652)
chr5 (357-429)||(17242890-17242962)
[»] chr1 (22 HSPs)
chr1 (335-440)||(11425783-11425888)
chr1 (339-440)||(4466072-4466173)
chr1 (339-440)||(16040166-16040267)
chr1 (339-434)||(34814012-34814107)
chr1 (338-435)||(3718767-3718863)
chr1 (349-431)||(37541040-37541123)
chr1 (375-440)||(28706577-28706642)
chr1 (372-436)||(29756092-29756157)
chr1 (362-435)||(40019853-40019926)
chr1 (375-435)||(4659525-4659585)
chr1 (385-429)||(47479928-47479972)
chr1 (338-397)||(10587498-10587557)
chr1 (373-439)||(26583818-26583885)
chr1 (372-435)||(36467146-36467209)
chr1 (368-435)||(49945026-49945093)
chr1 (337-436)||(24131316-24131415)
chr1 (357-435)||(27391441-27391519)
chr1 (340-429)||(5040494-5040583)
chr1 (339-432)||(46880512-46880605)
chr1 (373-436)||(3160638-3160702)
chr1 (333-436)||(26924031-26924135)
chr1 (329-440)||(50926836-50926948)
[»] chr2 (21 HSPs)
chr2 (339-440)||(37528988-37529089)
chr2 (352-434)||(6213780-6213862)
chr2 (338-439)||(7213565-7213666)
chr2 (356-435)||(2048386-2048465)
chr2 (338-429)||(45464131-45464222)
chr2 (337-435)||(9724972-9725070)
chr2 (357-429)||(20027084-20027156)
chr2 (356-436)||(4282951-4283033)
chr2 (368-435)||(44736960-44737027)
chr2 (339-436)||(314520-314618)
chr2 (369-429)||(10069532-10069592)
chr2 (362-429)||(41365822-41365887)
chr2 (372-434)||(23685054-23685116)
chr2 (357-435)||(28527058-28527136)
chr2 (373-435)||(28925799-28925861)
chr2 (374-439)||(38280148-38280213)
chr2 (376-436)||(13222161-13222222)
chr2 (356-397)||(38872855-38872896)
chr2 (387-440)||(39807302-39807355)
chr2 (368-429)||(43950394-43950455)
chr2 (373-436)||(6972491-6972554)
[»] chr6 (7 HSPs)
chr6 (337-440)||(9354355-9354458)
chr6 (339-434)||(33921386-33921481)
chr6 (385-429)||(7844437-7844481)
chr6 (372-433)||(4552996-4553059)
chr6 (374-423)||(6787439-6787488)
chr6 (339-438)||(15325237-15325337)
chr6 (339-438)||(15351300-15351400)
[»] chr8 (12 HSPs)
chr8 (329-429)||(27868232-27868332)
chr8 (337-429)||(7258282-7258374)
chr8 (332-434)||(27973596-27973698)
chr8 (332-434)||(28030865-28030967)
chr8 (368-435)||(42412329-42412396)
chr8 (338-428)||(7754976-7755065)
chr8 (373-434)||(14690055-14690117)
chr8 (372-436)||(45420888-45420953)
chr8 (368-440)||(5392138-5392210)
chr8 (338-436)||(32231301-32231400)
chr8 (358-419)||(35810521-35810582)
chr8 (357-429)||(6437980-6438052)
[»] chr7 (11 HSPs)
chr7 (338-436)||(32971933-32972032)
chr7 (338-440)||(32776072-32776175)
chr7 (344-436)||(47238310-47238403)
chr7 (349-429)||(31549549-31549629)
chr7 (372-435)||(30463110-30463173)
chr7 (339-436)||(37264406-37264502)
chr7 (369-435)||(3781127-3781193)
chr7 (369-429)||(39498773-39498836)
chr7 (357-429)||(45890793-45890865)
chr7 (374-438)||(5724660-5724724)
chr7 (374-434)||(7425829-7425889)
[»] chr3 (9 HSPs)
chr3 (339-440)||(21585327-21585428)
chr3 (357-429)||(2868674-2868746)
chr3 (357-429)||(17776929-17777001)
chr3 (357-429)||(19078230-19078302)
chr3 (357-429)||(46785914-46785986)
chr3 (369-439)||(24618874-24618945)
chr3 (334-436)||(46194118-46194221)
chr3 (357-423)||(14756049-14756115)
chr3 (370-435)||(39364985-39365051)
[»] chr4 (15 HSPs)
chr4 (339-435)||(22872303-22872399)
chr4 (339-424)||(12619792-12619877)
chr4 (363-434)||(17237138-17237209)
chr4 (338-436)||(28330887-28330986)
chr4 (335-429)||(48400544-48400638)
chr4 (369-435)||(52676978-52677044)
chr4 (352-429)||(9778864-9778941)
chr4 (357-421)||(39258205-39258269)
chr4 (373-435)||(42132909-42132972)
chr4 (372-423)||(42670333-42670384)
chr4 (372-436)||(49218732-49218797)
chr4 (386-435)||(49448935-49448984)
chr4 (368-440)||(4360354-4360426)
chr4 (372-440)||(33047581-33047649)
chr4 (368-431)||(40020891-40020957)
[»] scaffold0034 (1 HSPs)
scaffold0034 (368-435)||(98919-98986)
[»] scaffold0009 (1 HSPs)
scaffold0009 (332-395)||(220156-220219)
[»] scaffold0024 (1 HSPs)
scaffold0024 (1-39)||(7845-7882)


Alignment Details
Target: chr5 (Bit Score: 71; Significance: 5e-32; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 338 - 440
Target Start/End: Original strand, 39060339 - 39060441
Alignment:
Q  338 atactccctcggttccaatttaattgagttatttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggttttgagtgcct 437  Q
    |||||||||| ||||||||||||||||   ||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||| |    
T  39060339 atactccctccgttccaatttaattgaaccatttgctcatttcacacttattaagaaaaatatattagtgaaggagagagaaaaatggttttgagtgcat 39060438  T
Q  438 ttg 440  Q
    |||    
T  39060439 ttg 39060441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 339 - 440
Target Start/End: Original strand, 5357735 - 5357836
Alignment:
Q  339 tactccctcggttccaatttaattgagttatttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggttttgagtgcctt 438  Q
    ||||||||| || |||||||||||||   ||||||||||| ||| ||||||||||||||||||||||| || |||||||||||||||||||||||| |||    
T  5357735 tactccctccgtcccaatttaattgaaccatttgctcattacacacttattaagaaaaatatattagtgaaggagagagaaaaatggttttgagtgtctt 5357834  T
Q  439 tg 440  Q
    ||    
T  5357835 tg 5357836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 434
Target Start/End: Original strand, 30437647 - 30437752
Alignment:
Q  329 ataaaaataatactccctcggttccaatttaattgagttatttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggttt 428  Q
    ||||| ||||||||||| | || |||||||||||||   ||||  ||||||||| |||||||||||||||||||||   ||  ||| |||||||| ||||    
T  30437647 ataaacataatactcccaccgtcccaatttaattgaaccatttattcatttcacacttattaagaaaaatatattaacgaagaagacagaaaaatagttt 30437746  T
Q  429 tgagtg 434  Q
    ||||||    
T  30437747 tgagtg 30437752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 364 - 436
Target Start/End: Complemental strand, 42819069 - 42818996
Alignment:
Q  364 agttatttgctcatttcacgcttattaagaaaaa-tatattagtaaatgagagagaaaaatggttttgagtgcc 436  Q
    |||||||  |||||||||| |||||||||||||| | ||| |||||| |||| |||||||||||||||||||||    
T  42819069 agttattgactcatttcacacttattaagaaaaagtgtataagtaaaagagaaagaaaaatggttttgagtgcc 42818996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 436
Target Start/End: Complemental strand, 4195088 - 4195025
Alignment:
Q  375 catttcacgcttattaagaaaaa--tatattagtaaatgagagagaaaaatggttttgagtgcc 436  Q
    |||||||| ||||||||||||||  | ||| |||||| ||||||||||||||||||||||||||    
T  4195088 catttcacacttattaagaaaaaagtgtataagtaaaagagagagaaaaatggttttgagtgcc 4195025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 367 - 423
Target Start/End: Original strand, 41594793 - 41594849
Alignment:
Q  367 tatttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaat 423  Q
    |||||||||||||||  | ||||||||||||||||| ||| ||||||||||||||||    
T  41594793 tatttgctcatttcatacatattaagaaaaatatataagtgaatgagagagaaaaat 41594849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 362 - 429
Target Start/End: Complemental strand, 858502 - 858435
Alignment:
Q  362 tgagttatttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggtttt 429  Q
    ||||| ||||||||||||||| | ||||||||||||| ||| | |||| |||||| ||||||||||||    
T  858502 tgagtcatttgctcatttcacacatattaagaaaaatgtataaataaaggagagaaaaaaatggtttt 858435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 349 - 435
Target Start/End: Original strand, 7311110 - 7311194
Alignment:
Q  349 gttccaatttaattgagttatttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggttttgagtgc 435  Q
    |||||||||||| |||||  ||| || ||||||  ||||||||||||||| ||||| ||||  |||||||||||||||||| |||||    
T  7311110 gttccaatttaagtgagtcttttactgatttcatacttattaagaaaaatgtattaataaa--agagagaaaaatggttttaagtgc 7311194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 435
Target Start/End: Original strand, 6172912 - 6172994
Alignment:
Q  353 caatttaattgagttatttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggttttgagtgc 435  Q
    |||||||| |||||  ||| |||||||||| ||||||||||||||| ||||||| ||  ||||| |||||| ||||| |||||    
T  6172912 caatttaagtgagtcttttcctcatttcacacttattaagaaaaatgtattagtgaagaagagataaaaatagttttaagtgc 6172994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 434
Target Start/End: Original strand, 5147413 - 5147509
Alignment:
Q  339 tactccctcggttccaatttaattgagttatttgctcatttcacgcttattaag-aaaaatatattagtaaatgagagagaaaaatggttttgagtg 434  Q
    ||||||||| || ||| ||||| |||||  ||  |||||||||| ||||||||| |||||||||| ||| || || ||||||||||| |||||||||    
T  5147413 tactccctccgtcccattttaactgagtctttgactcatttcacacttattaagaaaaaatatataagtgaaagaaagagaaaaatgattttgagtg 5147509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 337 - 436
Target Start/End: Complemental strand, 38979097 - 38978997
Alignment:
Q  337 aatactccctcggttccaatttaattgagttatttgctcatttcacgcttattaagaaaaa-tatattagtaaatgagagagaaaaatggttttgagtgc 435  Q
    ||||||||||| || ||| ||||| ||||  |||| |||||||||| |||||||||||||| | ||  ||  || |||| ||||||||||||||||||||    
T  38979097 aatactccctccgtcccattttaactgagccatttactcatttcacacttattaagaaaaagtgtacaagggaaagagatagaaaaatggttttgagtgc 38978998  T
Q  436 c 436  Q
    |    
T  38978997 c 38978997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 435
Target Start/End: Complemental strand, 42211520 - 42211423
Alignment:
Q  338 atactccctcggttccaatttaattgagttatttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggttttgagtgc 435  Q
    |||||||||| || |||| ||||  |||| ||||||||||||||| | |||||| |||||| ||| | | || | | ||||||||||||||| |||||    
T  42211520 atactccctctgtcccaaattaaccgagtcatttgctcatttcacacatattaaaaaaaatgtataaatgaaggtgggagaaaaatggttttaagtgc 42211423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 435
Target Start/End: Original strand, 42575591 - 42575652
Alignment:
Q  374 tcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggttttgagtgc 435  Q
    ||||||||| | |||||||| |||| ||| | | |||||||||||||||||||||| |||||    
T  42575591 tcatttcacacatattaagacaaatgtataaatgaatgagagagaaaaatggttttaagtgc 42575652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 429
Target Start/End: Original strand, 17242890 - 17242962
Alignment:
Q  357 ttaattgagttatttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggtttt 429  Q
    |||| ||||| |||||||||  |||| | |||||||| |||| ||| | | ||||||||||||||||||||||    
T  17242890 ttaagtgagtcatttgctcaaatcacacatattaagacaaatgtataaatgaatgagagagaaaaatggtttt 17242962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 335 - 440
Target Start/End: Original strand, 11425783 - 11425888
Alignment:
Q  335 ataatactccctcggttccaatttaattgagttatttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggttttgagtg 434  Q
    ||||||||||||| || ||||||||||||||  |||||||||||||||| |||||||||||||||||||||| || ||||||||||||| ||||||||||    
T  11425783 ataatactccctccgtcccaatttaattgagccatttgctcatttcacgtttattaagaaaaatatattagtgaaggagagagaaaaatagttttgagtg 11425882  T
Q  435 cctttg 440  Q
     |||||    
T  11425883 tctttg 11425888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 339 - 440
Target Start/End: Original strand, 4466072 - 4466173
Alignment:
Q  339 tactccctcggttccaatttaattgagttatttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggttttgagtgcctt 438  Q
    ||||||||| || ||||||||||||||  ||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||    
T  4466072 tactccctccgtcccaatttaattgagccatttgttcatttcacacttattaagaaaaatatattagtgaatgagagagaaaaatgggtttgagtacctt 4466171  T
Q  439 tg 440  Q
    ||    
T  4466172 tg 4466173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 339 - 440
Target Start/End: Complemental strand, 16040267 - 16040166
Alignment:
Q  339 tactccctcggttccaatttaattgagttatttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggttttgagtgcctt 438  Q
    ||||||||| || | ||||||||||||| |||||||||||||||  |||||||||||||||||||||| || ||||||||||||||||||| |||| |||    
T  16040267 tactccctccgtccaaatttaattgagtcatttgctcatttcacatttattaagaaaaatatattagtcaaggagagagaaaaatggttttaagtgtctt 16040168  T
Q  439 tg 440  Q
    ||    
T  16040167 tg 16040166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 339 - 434
Target Start/End: Complemental strand, 34814107 - 34814012
Alignment:
Q  339 tactccctcggttccaatttaattgagttatttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggttttgagtg 434  Q
    ||||||||| || ||||||||| ||| || |||||||||||||| ||||||||||||||| ||||||| || ||||||||||||| ||||| ||||    
T  34814107 tactccctccgtcccaatttaagtgaattttttgctcatttcacacttattaagaaaaatgtattagtgaaggagagagaaaaatagttttaagtg 34814012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 338 - 435
Target Start/End: Original strand, 3718767 - 3718863
Alignment:
Q  338 atactccctcggttccaatttaattgagttatttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggttttgagtgc 435  Q
    |||||||||| || ||||||||| |||    |||||||||||||| ||||||||||||||| ||||| | || ||||||||||||| ||||| |||||    
T  3718767 atactccctctgtcccaatttaagtgaacattttgctcatttcacacttattaagaaaaatgtattaatgaa-gagagagaaaaatagttttaagtgc 3718863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 349 - 431
Target Start/End: Original strand, 37541040 - 37541123
Alignment:
Q  349 gttccaatttaattgagttatttgctcatttcacgcttattaagaaaaa-tatattagtaaatgagagagaaaaatggttttga 431  Q
    |||||| ||||||||||| |||   ||||||||| |||||||||||||| | ||| ||| || |||||||||||||||||||||    
T  37541040 gttccattttaattgagtcattgattcatttcacacttattaagaaaaagtgtataagtgaaagagagagaaaaatggttttga 37541123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 375 - 440
Target Start/End: Original strand, 28706577 - 28706642
Alignment:
Q  375 catttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggttttgagtgcctttg 440  Q
    |||||||| | |||||| |||||| ||| | | ||| |||||||||||||||||||||||||||||    
T  28706577 catttcacacatattaaaaaaaatgtataaatgaataagagagaaaaatggttttgagtgcctttg 28706642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 372 - 436
Target Start/End: Original strand, 29756092 - 29756157
Alignment:
Q  372 gctcatttcacgcttattaagaaaaa-tatattagtaaatgagagagaaaaatggttttgagtgcc 436  Q
    ||||||||||| |||||||||||||| | ||| ||| || ||||||||||||||| ||||||||||    
T  29756092 gctcatttcacacttattaagaaaaagtgtataagtgaaagagagagaaaaatgggtttgagtgcc 29756157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 362 - 435
Target Start/End: Complemental strand, 40019926 - 40019853
Alignment:
Q  362 tgagttatttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggttttgagtgc 435  Q
    ||||| ||||| |||||| || || |||||||||||| ||| ||| |||||||||||||||| ||||| |||||    
T  40019926 tgagtcatttgttcattttacactgattaagaaaaatgtataagtgaatgagagagaaaaattgttttaagtgc 40019853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 435
Target Start/End: Complemental strand, 4659585 - 4659525
Alignment:
Q  375 catttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggttttgagtgc 435  Q
    |||||||| ||||||||||||||| ||||||| || | ||||||||||| ||||| |||||    
T  4659585 catttcacacttattaagaaaaatgtattagtgaaggggagagaaaaatagttttaagtgc 4659525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 429
Target Start/End: Original strand, 47479928 - 47479972
Alignment:
Q  385 ttattaagaaaaatatattagtaaatgagagagaaaaatggtttt 429  Q
    |||||||||||||||||| | |||| |||||||||||||||||||    
T  47479928 ttattaagaaaaatatatcaataaacgagagagaaaaatggtttt 47479972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 397
Target Start/End: Original strand, 10587498 - 10587557
Alignment:
Q  338 atactccctcggttccaatttaattgagttatttgctcatttcacgcttattaagaaaaa 397  Q
    |||||||||| || ||| ||||| |||||||||  |||||||||| ||||||||||||||    
T  10587498 atactccctccgtcccattttaagtgagttattgactcatttcacacttattaagaaaaa 10587557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 439
Target Start/End: Complemental strand, 26583885 - 26583818
Alignment:
Q  373 ctcatttcacgcttattaagaaaaa-tatattagtaaatgagagagaaaaatggttttgagtgccttt 439  Q
    |||||||||| |||||||||||||| | ||| ||| || ||||||||||||||  |||||||||||||    
T  26583885 ctcatttcacacttattaagaaaaagtgtataagtgaaagagagagaaaaatgagtttgagtgccttt 26583818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 435
Target Start/End: Original strand, 36467146 - 36467209
Alignment:
Q  372 gctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggttttgagtgc 435  Q
    ||||||||||| | ||||||||||||| ||| | | |||||||||||||||| ||||| |||||    
T  36467146 gctcatttcacacgtattaagaaaaatgtataaatgaatgagagagaaaaatagttttaagtgc 36467209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 435
Target Start/End: Complemental strand, 49945093 - 49945026
Alignment:
Q  368 atttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggttttgagtgc 435  Q
    ||||||||||||||| | ||||||||||||| ||| | | ||  |||||||||||||||||| |||||    
T  49945093 atttgctcatttcacacatattaagaaaaatgtataaatgaagaagagagaaaaatggttttaagtgc 49945026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 436
Target Start/End: Original strand, 24131316 - 24131415
Alignment:
Q  337 aatactccctcggttccaatttaattgagttatttg-ctcatttcacgcttattaagaaaaa-tatattagtaaatgagagagaaaaatggttttgagtg 434  Q
    ||||||||||| || ||| ||||| ||||| ||||| |||||||||| ||||||||||||||   ||| ||| ||  |||||||||||||||||||| ||    
T  24131316 aatactccctccgtcccattttaactgagtcatttgactcatttcacacttattaagaaaaagcgtataagtgaa--agagagaaaaatggttttgaatg 24131413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 435
Target Start/End: Complemental strand, 27391519 - 27391441
Alignment:
Q  357 ttaattgagttatttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggttttgagtgc 435  Q
    |||| ||||| ||||| ||| ||||| ||||||| ||||||| ||| ||| || |||||||||||||| |||| |||||    
T  27391519 ttaagtgagtcatttgttcaattcacacttattacgaaaaatgtataagtgaaggagagagaaaaatgattttaagtgc 27391441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 429
Target Start/End: Original strand, 5040494 - 5040583
Alignment:
Q  340 actccctcggttccaatttaattgagttatttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggtttt 429  Q
    |||||||| || |||  |||| |||||  |||||||||||||| | |||| ||| |||| ||| | | ||||||||||||||||||||||    
T  5040494 actccctccgtcccagattaagtgagtcctttgctcatttcacacatatttagacaaatgtataaatgaatgagagagaaaaatggtttt 5040583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 432
Target Start/End: Complemental strand, 46880605 - 46880512
Alignment:
Q  339 tactccctcggttccaatttaattgagttatttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggttttgag 432  Q
    |||||| || ||||||| ||||| |||| ||||| | ||||||| | ||||||||||| | ||| | | || |||||||||||||| |||||||    
T  46880605 tactccatccgttccaaattaatcgagtcatttgtttatttcacacatattaagaaaattgtataaatgaaggagagagaaaaatgattttgag 46880512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 436
Target Start/End: Original strand, 3160638 - 3160702
Alignment:
Q  373 ctcatttcacgcttattaagaaaaa-tatattagtaaatgagagagaaaaatggttttgagtgcc 436  Q
    |||||||||| |||||||||||||| | ||| ||| || |||| |||||||||| ||||||||||    
T  3160638 ctcatttcacacttattaagaaaaagtgtataagtgaaagagaaagaaaaatgggtttgagtgcc 3160702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 436
Target Start/End: Original strand, 26924031 - 26924135
Alignment:
Q  333 aaataatactccctcggttccaatttaattgagttatttgctcatttcacgcttattaagaaaaa-tatattagtaaatgagagagaaaaatggttttga 431  Q
    ||||| ||||||||| || ||  ||||| |||| | || ||||||||||| |||||||||||||| | ||  ||| || ||||||||||||||  |||||    
T  26924031 aaatactactccctccgtcccgttttaactgagctcttggctcatttcacacttattaagaaaaagtgtaaaagtgaaagagagagaaaaatgagtttga 26924130  T
Q  432 gtgcc 436  Q
    |||||    
T  26924131 gtgcc 26924135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 440
Target Start/End: Complemental strand, 50926948 - 50926836
Alignment:
Q  329 ataaaaataatactccctcggttccaatttaattgagttatttgctcatttcacgcttattaagaaaaata-tattagtaaatgagagagaaaaatggtt 427  Q
    ||||||||  ||||||||| ||  || ||||| |||| | ||| ||||||||||   |||||||||||||  ||| || ||| |||||||||||||||||    
T  50926948 ataaaaattgtactccctccgtctcattttaactgagcttttttctcatttcacatatattaagaaaaattgtataagaaaaagagagagaaaaatggtt 50926849  T
Q  428 ttgagtgcctttg 440  Q
    |||| ||| ||||    
T  50926848 ttgaatgcatttg 50926836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 339 - 440
Target Start/End: Original strand, 37528988 - 37529089
Alignment:
Q  339 tactccctcggttccaatttaattgagttatttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggttttgagtgcctt 438  Q
    ||||||||| || ||||||||| ||||| ||||| ||||||||| |||||||| ||||||||||||||||| || ||||||||||||||||||||| |||    
T  37528988 tactccctccgtcccaatttaactgagtcatttgttcatttcacacttattaaaaaaaatatattagtaaaggatagagaaaaatggttttgagtgtctt 37529087  T
Q  439 tg 440  Q
    ||    
T  37529088 tg 37529089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 352 - 434
Target Start/End: Original strand, 6213780 - 6213862
Alignment:
Q  352 ccaatttaattgagttatttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggttttgagtg 434  Q
    ||||||||| |||||  |||||||||||||| |||||||||||||||  |||||| ||||| ||||||||||| |||| ||||    
T  6213780 ccaatttaagtgagtcttttgctcatttcacacttattaagaaaaatgaattagtgaatgaaagagaaaaatgattttaagtg 6213862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 439
Target Start/End: Complemental strand, 7213666 - 7213565
Alignment:
Q  338 atactccctcggttccaatttaattgagttatttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggttttgagtgcct 437  Q
    ||||||||||||| ||| ||||||||||  |||| |||||||||| |  |||||||||||| ||| | | ||  ||||||||||||| ||||||||||||    
T  7213666 atactccctcggtcccagtttaattgagccattttctcatttcacacagattaagaaaaatgtataaatgaaatagagagaaaaatgattttgagtgcct 7213567  T
Q  438 tt 439  Q
    ||    
T  7213566 tt 7213565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 356 - 435
Target Start/End: Complemental strand, 2048465 - 2048386
Alignment:
Q  356 tttaattgagttatttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggttttgagtgc 435  Q
    ||||| |||||||||  |||||||||| |||||||| |||||| ||| ||| || ||||||||||||||||| |||||||    
T  2048465 tttaactgagttattgactcatttcacacttattaaaaaaaatgtataagtgaaagagagagaaaaatggttatgagtgc 2048386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 429
Target Start/End: Original strand, 45464131 - 45464222
Alignment:
Q  338 atactccctcggttccaatttaattgagttatttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggtttt 429  Q
    |||||| ||| || |||| |||| ||||| ||||||||||||||| | ||||||||||||| ||| ||| ||||||||| ||||||| ||||    
T  45464131 atactctctccgtcccaaattaagtgagtcatttgctcatttcacacatattaagaaaaatgtataagtgaatgagagaaaaaaatgatttt 45464222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 337 - 435
Target Start/End: Complemental strand, 9725070 - 9724972
Alignment:
Q  337 aatactccctcggttccaatttaattgagttatttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggttttgagtgc 435  Q
    ||||||||||| || | ||||||||||||| |||| |||||||||| | ||||||||||| | ||| | | || |||||||| ||||| ||||||||||    
T  9725070 aatactccctccgtcctaatttaattgagtcattttctcatttcacacatattaagaaaagtgtataaatgaaagagagagagaaatgattttgagtgc 9724972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 429
Target Start/End: Original strand, 20027084 - 20027156
Alignment:
Q  357 ttaattgagttatttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggtttt 429  Q
    |||| ||||||||||||||||||||  | ||||||||||| ||||| ||  |||||||||||||||| |||||    
T  20027084 ttaagtgagttatttgctcatttcagacatattaagaaaagtatataagcgaatgagagagaaaaatagtttt 20027156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 356 - 436
Target Start/End: Original strand, 4282951 - 4283033
Alignment:
Q  356 tttaattgagttatttgctcatttcacgcttattaagaaaaa--tatattagtaaatgagagagaaaaatggttttgagtgcc 436  Q
    ||||| |||||  ||||||||||| ||| |||||||||||||  | ||| |||||| ||||||||||||||||||||| ||||    
T  4282951 tttaactgagtcttttgctcattttacgtttattaagaaaaaagtgtataagtaaaagagagagaaaaatggttttgaatgcc 4283033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 368 - 435
Target Start/End: Complemental strand, 44737027 - 44736960
Alignment:
Q  368 atttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggttttgagtgc 435  Q
    ||||||||||||||| | ||||||||||||| ||| ||| ||||||||| ||||||| |||| |||||    
T  44737027 atttgctcatttcacacatattaagaaaaatgtataagttaatgagagataaaaatgattttaagtgc 44736960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 436
Target Start/End: Complemental strand, 314618 - 314520
Alignment:
Q  339 tactccctcggttccaatttaattgagttatttgctcatttcacgcttattaagaaaaa-tatattagtaaatgagagagaaaaatggttttgagtgcc 436  Q
    ||||||||| || ||| ||||| ||||  |||  |||||||||| |||||||||||||| | ||| ||| || ||||||| ||||||||||||||||||    
T  314618 tactccctccgtcccattttaactgagcgattgactcatttcacacttattaagaaaaagtgtataagtgaaagagagaggaaaatggttttgagtgcc 314520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 429
Target Start/End: Original strand, 10069532 - 10069592
Alignment:
Q  369 tttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggtttt 429  Q
    |||||||||||||| || |||||||||||||||| ||| || |||||| ||||||| ||||    
T  10069532 tttgctcatttcacactcattaagaaaaatatataagtgaaagagagataaaaatgatttt 10069592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 429
Target Start/End: Complemental strand, 41365887 - 41365822
Alignment:
Q  362 tgagttatttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggtttt 429  Q
    ||||||||||| ||||||||| | ||||||||||| ||||  ||| ||||||||||||| ||||||||    
T  41365887 tgagttatttgttcatttcacacatattaagaaaattata--agtgaatgagagagaaatatggtttt 41365822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 434
Target Start/End: Complemental strand, 23685116 - 23685054
Alignment:
Q  372 gctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggttttgagtg 434  Q
    ||||||||||||| ||||||||||||| ||| | |||| ||||||||||| | ||||| ||||    
T  23685116 gctcatttcacgcatattaagaaaaatgtataaataaaggagagagaaaattagttttaagtg 23685054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 435
Target Start/End: Complemental strand, 28527136 - 28527058
Alignment:
Q  357 ttaattgagttatttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggttttgagtgc 435  Q
    |||| ||||| ||||||||||||||| | ||||||||||||| ||| | | || |||| | |||||||||||| |||||    
T  28527136 ttaactgagtcatttgctcatttcacacatattaagaaaaatgtataaatgaaggagaaaaaaaaatggttttaagtgc 28527058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 435
Target Start/End: Original strand, 28925799 - 28925861
Alignment:
Q  373 ctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggttttgagtgc 435  Q
    |||||||||| | ||||||||||||| ||| | |||| ||||||||||||| ||||| |||||    
T  28925799 ctcatttcacacgtattaagaaaaatgtataaataaaggagagagaaaaatagttttaagtgc 28925861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 439
Target Start/End: Original strand, 38280148 - 38280213
Alignment:
Q  374 tcatttcacgcttattaagaaaaatatatta-gtaaatgagagagaaaaatggttttgagtgccttt 439  Q
    ||||||||| | ||||||||||||| ||| | | |||| ||||||||||||||||||||||||||||    
T  38280148 tcatttcacacatattaagaaaaatgtataaaggaaat-agagagaaaaatggttttgagtgccttt 38280213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 436
Target Start/End: Complemental strand, 13222222 - 13222161
Alignment:
Q  376 atttcacgcttattaagaaaaa-tatattagtaaatgagagagaaaaatggttttgagtgcc 436  Q
    ||||||| |||||||||||||| | ||| ||| || ||||||||||||||| ||||||||||    
T  13222222 atttcacacttattaagaaaaaatgtataagtgaaagagagagaaaaatgggtttgagtgcc 13222161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 397
Target Start/End: Original strand, 38872855 - 38872896
Alignment:
Q  356 tttaattgagttatttgctcatttcacgcttattaagaaaaa 397  Q
    |||||||||||| |||||||||||||  ||||||||||||||    
T  38872855 tttaattgagttttttgctcatttcatacttattaagaaaaa 38872896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 440
Target Start/End: Complemental strand, 39807355 - 39807302
Alignment:
Q  387 attaagaaaaatatattagtaaatgagagagaaaaatggttttgagtgcctttg 440  Q
    |||||||||||| ||| | | || |||| |||||||||||||||||||||||||    
T  39807355 attaagaaaaatgtataaatcaaagagaaagaaaaatggttttgagtgcctttg 39807302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 429
Target Start/End: Original strand, 43950394 - 43950455
Alignment:
Q  368 atttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggtttt 429  Q
    |||| |||||||||| |||||||| |||||| ||| ||| || ||||||||||||| |||||    
T  43950394 atttactcatttcacacttattaaaaaaaatgtataagtgaaagagagagaaaaatagtttt 43950455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 436
Target Start/End: Original strand, 6972491 - 6972554
Alignment:
Q  373 ctcatttcacgcttattaag-aaaaatatattagtaaatgagagagaaaaatggttttgagtgcc 436  Q
    |||||||||| ||||||||| |||||| ||| ||| || ||||||| ||||||||||||||||||    
T  6972491 ctcatttcacacttattaagaaaaaatgtataagtgaaagagagag-aaaatggttttgagtgcc 6972554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 337 - 440
Target Start/End: Original strand, 9354355 - 9354458
Alignment:
Q  337 aatactccctcggttccaatttaattgagttatttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggttttgagtgcc 436  Q
    ||||| ||||| |||| ||||||| ||||| ||||||| |||| ||  || ||||||||||||||||||| ||||||||||||||||||||||||||| |    
T  9354355 aataccccctccgttctaatttaactgagtcatttgcttattttacattttttaagaaaaatatattagtgaatgagagagaaaaatggttttgagtgtc 9354454  T
Q  437 tttg 440  Q
    ||||    
T  9354455 tttg 9354458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 339 - 434
Target Start/End: Original strand, 33921386 - 33921481
Alignment:
Q  339 tactccctcggttccaatttaattgagttatttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggttttgagtg 434  Q
    ||||||||| || ||| ||||| ||||  ||||||||||||| | ||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  33921386 tactccctccgtcccattttaactgagccatttgctcatttcgcacttattaagaaaaatatattagtgaaggagagagaaaaatggttttgagtg 33921481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 429
Target Start/End: Complemental strand, 7844481 - 7844437
Alignment:
Q  385 ttattaagaaaaatatattagtaaatgagagagaaaaatggtttt 429  Q
    ||||||||||||||||||  || ||||||||||||||||||||||    
T  7844481 ttattaagaaaaatatatatgtgaatgagagagaaaaatggtttt 7844437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 433
Target Start/End: Complemental strand, 4553059 - 4552996
Alignment:
Q  372 gctcatttcacgcttattaagaaaa-atatattagtaaat-gagagagaaaaatggttttgagt 433  Q
    ||||||||||| ||||||||||||| || ||| ||||||  |||||||||||||||||||||||    
T  4553059 gctcatttcacacttattaagaaaatatgtataagtaaaaagagagagaaaaatggttttgagt 4552996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 423
Target Start/End: Complemental strand, 6787488 - 6787439
Alignment:
Q  374 tcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaat 423  Q
    ||||| ||| ||||||||||||||||||||||| ||||| | ||||||||    
T  6787488 tcattgcacacttattaagaaaaatatattagtgaatgaaaaagaaaaat 6787439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 438
Target Start/End: Complemental strand, 15325337 - 15325237
Alignment:
Q  339 tactccctcggttccaatttaattgagttatttgctcatttcacgcttattaagaaaaa-tatattagtaaatgagagagaaaaatggttttgagtgcct 437  Q
    ||||||||| || ||| ||||| |||| | ||  ||||||||||  ||||||||||||| | ||| ||| || ||||||||||| ||||||||| |||||    
T  15325337 tactccctccgtcccattttaactgagctcttgactcatttcacaattattaagaaaaagtgtataagtgaaagagagagaaaattggttttgaatgcct 15325238  T
Q  438 t 438  Q
    |    
T  15325237 t 15325237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 438
Target Start/End: Original strand, 15351300 - 15351400
Alignment:
Q  339 tactccctcggttccaatttaattgagttatttgctcatttcacgcttattaagaaaaa-tatattagtaaatgagagagaaaaatggttttgagtgcct 437  Q
    ||||||||| || ||| ||||||||| |  ||  ||||||||||  ||||||||||||| | ||| ||| |||||||||||||| || |||| |||||||    
T  15351300 tactccctctgtcccattttaattgaatccttgactcatttcacaattattaagaaaaaatgtataagtgaatgagagagaaaattgatttttagtgcct 15351399  T
Q  438 t 438  Q
    |    
T  15351400 t 15351400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 329 - 429
Target Start/End: Original strand, 27868232 - 27868332
Alignment:
Q  329 ataaaaataatactccctcggttccaatttaattgagttatttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggttt 428  Q
    ||||||| ||||||||||  ||| |||||||| |||||  |||||||||||||| ||||||||||||||| ||||||| |||||  ||||||||||||||    
T  27868232 ataaaaagaatactcccttcgtttcaatttaagtgagtattttgctcatttcacacttattaagaaaaatgtattagtgaatgatggagaaaaatggttt 27868331  T
Q  429 t 429  Q
    |    
T  27868332 t 27868332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 337 - 429
Target Start/End: Original strand, 7258282 - 7258374
Alignment:
Q  337 aatactccctcggttccaatttaattgagttatttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggtttt 429  Q
    ||||||||||| ||  |||||||| |||||| |||||| ||||||| |||||||| |||||||||||| | || || ||||||||||||||||    
T  7258282 aatactccctccgtcgcaatttaactgagttctttgcttatttcacacttattaaaaaaaatatattaatgaaggaaagagaaaaatggtttt 7258374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 332 - 434
Target Start/End: Original strand, 27973596 - 27973698
Alignment:
Q  332 aaaataatactccctcggttccaatttaattgagttatttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggttttga 431  Q
    |||| ||||||| ||| || ||||||||| ||||   |||||||||||||| ||||||||||||||| ||||||| || ||  ||||||||||||||| |    
T  27973596 aaaagaatactctctccgtcccaatttaagtgagcattttgctcatttcacacttattaagaaaaatgtattagtgaaggatggagaaaaatggttttaa 27973695  T
Q  432 gtg 434  Q
    |||    
T  27973696 gtg 27973698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 332 - 434
Target Start/End: Original strand, 28030865 - 28030967
Alignment:
Q  332 aaaataatactccctcggttccaatttaattgagttatttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggttttga 431  Q
    |||| ||||||| ||| || ||||||||| ||||   |||||||||||||| ||||||||||||||| ||||||| || ||  ||||||||||||||| |    
T  28030865 aaaagaatactctctccgtcccaatttaagtgagcattttgctcatttcacacttattaagaaaaatgtattagtgaaggatggagaaaaatggttttaa 28030964  T
Q  432 gtg 434  Q
    |||    
T  28030965 gtg 28030967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 368 - 435
Target Start/End: Original strand, 42412329 - 42412396
Alignment:
Q  368 atttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggttttgagtgc 435  Q
    ||||||||||||||| | ||||||||||||| ||| ||| |||||||||||||||| ||||| |||||    
T  42412329 atttgctcatttcacacatattaagaaaaatgtataagtgaatgagagagaaaaatagttttaagtgc 42412396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 428
Target Start/End: Original strand, 7754976 - 7755065
Alignment:
Q  338 atactccctcggttccaatttaattgagttatttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggttt 428  Q
    ||||||| || || ||||||||| |||| | ||||||||||| || ||| |||| |||||| ||||| |||| ||||||||||||||||||    
T  7754976 atactccatccgtcccaatttaagtgagctttttgctcatttgacacttgttaa-aaaaatgtattaataaaggagagagaaaaatggttt 7755065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 434
Target Start/End: Complemental strand, 14690117 - 14690055
Alignment:
Q  373 ctcatttcacgcttattaagaaaaa-tatattagtaaatgagagagaaaaatggttttgagtg 434  Q
    |||||||||| |||||||||||||| | ||| ||| || ||||||||||||||||||||||||    
T  14690117 ctcatttcacacttattaagaaaaagtgtataagtgaaagagagagaaaaatggttttgagtg 14690055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 372 - 436
Target Start/End: Original strand, 45420888 - 45420953
Alignment:
Q  372 gctcatttcacgcttattaagaaaaa-tatattagtaaatgagagagaaaaatggttttgagtgcc 436  Q
    ||||||||||| |||||||||||||| | ||| ||| || ||||||||||||||| ||||||||||    
T  45420888 gctcatttcacacttattaagaaaaagtgtataagtgaaagagagagaaaaatgggtttgagtgcc 45420953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 440
Target Start/End: Complemental strand, 5392210 - 5392138
Alignment:
Q  368 atttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggttttgagtgcctttg 440  Q
    ||||||||||||||| | |||||||| |||| ||| | | || ||||||||||||||||||| ||||| ||||    
T  5392210 atttgctcatttcacacctattaagacaaatgtataaatgaaggagagagaaaaatggttttaagtgcttttg 5392138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 436
Target Start/End: Original strand, 32231301 - 32231400
Alignment:
Q  338 atactccctcggttccaatttaattgagttatttgctcatttcacgcttattaagaaaaa-tatattagtaaatgagagagaaaaatggttttgagtgcc 436  Q
    |||||||||| || ||| ||||||||||   ||  ||||||||||  ||||||||||||| | ||| ||| || ||||||| ||||||||||||||||||    
T  32231301 atactccctccgtcccattttaattgagcccttgtctcatttcacatttattaagaaaaaatgtataagtgaaagagagaggaaaatggttttgagtgcc 32231400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 419
Target Start/End: Original strand, 35810521 - 35810582
Alignment:
Q  358 taattgagttatttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaa 419  Q
    ||||||||||||||| | ||||||| |||||||| |||| ||||| |||||| |||| ||||    
T  35810521 taattgagttatttgattatttcacacttattaaaaaaattatataagtaaaagagaaagaa 35810582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 429
Target Start/End: Complemental strand, 6438052 - 6437980
Alignment:
Q  357 ttaattgagttatttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggtttt 429  Q
    |||| ||||||||||| |||||| |||  |||||| |||||| ||| ||| ||||||| |||||||| |||||    
T  6438052 ttaagtgagttatttgttcattttacgtatattaaaaaaaatgtataagtgaatgagacagaaaaattgtttt 6437980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 338 - 436
Target Start/End: Original strand, 32971933 - 32972032
Alignment:
Q  338 atactccctcggttccaatttaattgagttatttgctcatttcacgcttattaag-aaaaatatattagtaaatgagagagaaaaatggttttgagtgcc 436  Q
    |||||||||| |||||| ||||||||||| |||  |||||||||| ||||||||| |||||| ||| ||| || ||||||||||||||||||||||||||    
T  32971933 atactccctccgttccattttaattgagtcattgactcatttcacacttattaagaaaaaatgtataagtgaaagagagagaaaaatggttttgagtgcc 32972032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 338 - 440
Target Start/End: Complemental strand, 32776175 - 32776072
Alignment:
Q  338 atactccctcggttccaatttaattgagttatttgctcatttcacgcttattaagaaaaa-tatattagtaaatgagagagaaaaatggttttgagtgcc 436  Q
    |||||||||| |||||| | ||| ||||   |||||||||||||| | |||||||||||| | ||| ||| || ||||||||||||||||||||||||||    
T  32776175 atactccctccgttccattataaatgagccttttgctcatttcacacatattaagaaaaagtgtataagtgaaggagagagaaaaatggttttgagtgcc 32776076  T
Q  437 tttg 440  Q
    ||||    
T  32776075 tttg 32776072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 344 - 436
Target Start/End: Complemental strand, 47238403 - 47238310
Alignment:
Q  344 cctcggttccaatttaattgagttatttgctcatttcacgcttattaagaaaaa-tatattagtaaatgagagagaaaaatggttttgagtgcc 436  Q
    |||| |||||| |||||  |||| ||| ||||||||||| |||||||||||||| | ||| ||| || ||||||||||||||||||||||||||    
T  47238403 cctccgttccattttaaccgagtcattggctcatttcacacttattaagaaaaagtgtataagtgaaagagagagaaaaatggttttgagtgcc 47238310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 349 - 429
Target Start/End: Original strand, 31549549 - 31549629
Alignment:
Q  349 gttccaatttaattgagttatttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggtttt 429  Q
    |||||||||||| |||||  ||||||||||| || |||||||||||||| |||||||| || |||| ||||||| ||||||    
T  31549549 gttccaatttaactgagtcttttgctcattttacacttattaagaaaaaaatattagtgaaggagaaagaaaaacggtttt 31549629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 372 - 435
Target Start/End: Complemental strand, 30463173 - 30463110
Alignment:
Q  372 gctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggttttgagtgc 435  Q
    ||||||||||||| ||||||||||||| ||| | | |||||||||||||||| ||||| |||||    
T  30463173 gctcatttcacgcgtattaagaaaaatgtataaatgaatgagagagaaaaatagttttaagtgc 30463110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 339 - 436
Target Start/End: Complemental strand, 37264502 - 37264406
Alignment:
Q  339 tactccctcggttccaatttaattgagttatttgctcatttcacgcttattaagaaaaa-tatattagtaaatgagagagaaaaatggttttgagtgcc 436  Q
    ||||||||| || ||| ||||| ||||   |||||||||||||| | |||||||||||| ||||| ||| ||  |||||||||||||||||||||||||    
T  37264502 tactccctccgtcccattttaagtgagccttttgctcatttcacacatattaagaaaaagtatataagtgaa--agagagaaaaatggttttgagtgcc 37264406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 435
Target Start/End: Original strand, 3781127 - 3781193
Alignment:
Q  369 tttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggttttgagtgc 435  Q
    |||||||||||||| | |||| | |||||| ||||||||||||| | |||||||||||||| |||||    
T  3781127 tttgctcatttcacacatattgaaaaaaatgtattagtaaatgaaaaagaaaaatggttttaagtgc 3781193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 369 - 429
Target Start/End: Complemental strand, 39498836 - 39498773
Alignment:
Q  369 tttgctcatttcacgcttattaagaaaaata---tattagtaaatgagagagaaaaatggtttt 429  Q
    |||||||||||||| |||||||| |||||||   ||||||| |||||||||||||||| |||||    
T  39498836 tttgctcatttcacacttattaaaaaaaatatagtattagtgaatgagagagaaaaatagtttt 39498773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 357 - 429
Target Start/End: Original strand, 45890793 - 45890865
Alignment:
Q  357 ttaattgagttatttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggtttt 429  Q
    |||| ||||||||||| ||||||||| | ||||||||||||| ||| |   || |||||||||||||||||||    
T  45890793 ttaactgagttatttgttcatttcacacgtattaagaaaaatgtataaaagaaggagagagaaaaatggtttt 45890865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 438
Target Start/End: Original strand, 5724660 - 5724724
Alignment:
Q  374 tcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggttttgagtgcctt 438  Q
    ||||||||| | ||||||||||||| ||| | | || ||||||||||||| ||||| ||||||||    
T  5724660 tcatttcacacgtattaagaaaaatgtataaatgaaggagagagaaaaatagttttaagtgcctt 5724724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 434
Target Start/End: Original strand, 7425829 - 7425889
Alignment:
Q  374 tcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggttttgagtg 434  Q
    ||||||||| | |||||||| |||| ||| | | |||||||||||||||||||||| ||||    
T  7425829 tcatttcacacgtattaagacaaatgtataaatgaatgagagagaaaaatggttttaagtg 7425889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 339 - 440
Target Start/End: Original strand, 21585327 - 21585428
Alignment:
Q  339 tactccctcggttccaatttaattgagttatttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggttttgagtgcctt 438  Q
    |||||||||  | ||||||||||||||  |||| |||||| |||  ||||| |||||||||||||||| || || ||||||||||| ||||||||| |||    
T  21585327 tactccctccctcccaatttaattgagcaatttactcattccacatttattgagaaaaatatattagtgaaggacagagaaaaatgattttgagtgtctt 21585426  T
Q  439 tg 440  Q
    ||    
T  21585427 tg 21585428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 429
Target Start/End: Complemental strand, 2868746 - 2868674
Alignment:
Q  357 ttaattgagttatttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggtttt 429  Q
    |||| ||||| ||||||||||||||| | ||||||||||||| ||| | | || |||||||||||||||||||    
T  2868746 ttaactgagtcatttgctcatttcacacatattaagaaaaatgtataaatgaaggagagagaaaaatggtttt 2868674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 429
Target Start/End: Original strand, 17776929 - 17777001
Alignment:
Q  357 ttaattgagttatttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggtttt 429  Q
    |||| ||||| ||||||||||||||| | |||||| |||||| ||| | | ||||||||||||||||||||||    
T  17776929 ttaactgagtcatttgctcatttcacacgtattaaaaaaaatgtataaatgaatgagagagaaaaatggtttt 17777001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 429
Target Start/End: Original strand, 19078230 - 19078302
Alignment:
Q  357 ttaattgagttatttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggtttt 429  Q
    |||| ||||| ||||||||||||||| | |||||| |||||| ||| | | ||||||||||||||||||||||    
T  19078230 ttaactgagtcatttgctcatttcacacgtattaaaaaaaatgtataaatgaatgagagagaaaaatggtttt 19078302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 357 - 429
Target Start/End: Original strand, 46785914 - 46785986
Alignment:
Q  357 ttaattgagttatttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggtttt 429  Q
    |||| ||||| |||| ||||||||||   ||||||||||||| |||||||||| |||||| |||||| |||||    
T  46785914 ttaactgagtcatttactcatttcacatatattaagaaaaatgtattagtaaaggagagaaaaaaatagtttt 46785986  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 439
Target Start/End: Original strand, 24618874 - 24618945
Alignment:
Q  369 tttgctcatttcacgcttattaagaaaaa-tatattagtaaatgagagagaaaaatggttttgagtgccttt 439  Q
    ||||||| |||||| |||||||||||||| | ||| ||| || | ||||||||||||||||| |||||||||    
T  24618874 tttgctcgtttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaagtgccttt 24618945  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 436
Target Start/End: Original strand, 46194118 - 46194221
Alignment:
Q  334 aataatactccctcggttccaatttaattgagttatttgctcatttcacgcttattaagaaaaa-tatattagtaaatgagagagaaaaatggttttgag 432  Q
    |||| ||||||||| || ||||||||| ||||   ||  || ||||||| |||||||||||||| | ||| ||| || ||||||||||||||| ||||||    
T  46194118 aatattactccctccgtcccaatttaactgagcccttgactaatttcacacttattaagaaaaagtgtataagttaaagagagagaaaaatgggtttgag 46194217  T
Q  433 tgcc 436  Q
    ||||    
T  46194218 tgcc 46194221  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 423
Target Start/End: Original strand, 14756049 - 14756115
Alignment:
Q  357 ttaattgagttatttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaat 423  Q
    |||| ||||| |||||||||||| || | ||||||||||||| ||| | |||| |||||||||||||    
T  14756049 ttaactgagtcatttgctcattttacacatattaagaaaaatgtataattaaaggagagagaaaaat 14756115  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 435
Target Start/End: Original strand, 39364985 - 39365051
Alignment:
Q  370 ttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaa-tggttttgagtgc 435  Q
    ||||||||||||| | ||||||||||||| ||| | |||| |||||||||||| ||||||| |||||    
T  39364985 ttgctcatttcacacatattaagaaaaatgtataaataaaggagagagaaaaagtggttttaagtgc 39365051  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 339 - 435
Target Start/End: Original strand, 22872303 - 22872399
Alignment:
Q  339 tactccctcggttccaatttaattgagttatttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggttttgagtgc 435  Q
    ||||||||| || |||| |||| ||||  ||||||||||||||| | ||||||||||||| ||| ||| ||  |||||||||||||||||| |||||    
T  22872303 tactccctccgtcccaaattaagtgagccatttgctcatttcacacatattaagaaaaatgtataagtgaagaagagagaaaaatggttttaagtgc 22872399  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 424
Target Start/End: Complemental strand, 12619877 - 12619792
Alignment:
Q  339 tactccctcggttccaatttaattgagttatttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatg 424  Q
    |||||||| ||||| || |||| ||||||||||| ||||||||  ||||||||||||||| ||| ||| || ||| ||||||||||    
T  12619877 tactccctaggttctaaattaagtgagttatttgttcatttcatacttattaagaaaaatgtataagtgaaagagcgagaaaaatg 12619792  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 363 - 434
Target Start/End: Complemental strand, 17237209 - 17237138
Alignment:
Q  363 gagttatttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggttttgagtg 434  Q
    |||| ||||||||||||||| | ||||||||||||||||| | | || ||||||||||||| ||||| ||||    
T  17237209 gagtcatttgctcatttcacacctattaagaaaaatatataaatgaaggagagagaaaaatagttttaagtg 17237138  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 436
Target Start/End: Complemental strand, 28330986 - 28330887
Alignment:
Q  338 atactccctcggttccaatttaattgagttatttgctcatttcacgcttattaagaaaaa-tatattagtaaatgagagagaaaaatggttttgagtgcc 436  Q
    |||||||||| || ||| ||||| ||||  |||  |||||||||| |||||||||||||| | ||| ||| || ||||||||||||||| ||||||||||    
T  28330986 atactccctccgtcccattttaactgagccattgactcatttcacacttattaagaaaaagtgtataagtgaaagagagagaaaaatgggtttgagtgcc 28330887  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 429
Target Start/End: Original strand, 48400544 - 48400638
Alignment:
Q  335 ataatactccctcggttccaatttaattgagttatttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggtttt 429  Q
    ||||||||||||| || | | ||||||||||| |||| |||||||||| |  |||||||||||| ||| | | || |||||||||||||| ||||    
T  48400544 ataatactccctccgtcctagtttaattgagtcattttctcatttcacacagattaagaaaaatgtataaatgaaagagagagaaaaatgatttt 48400638  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 435
Target Start/End: Original strand, 52676978 - 52677044
Alignment:
Q  369 tttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggttttgagtgc 435  Q
    |||||||||||||   |||||||||||||| ||||||| ||||| ||||||||||| |||| |||||    
T  52676978 tttgctcatttcatatttattaagaaaaatgtattagtgaatgaaagagaaaaatgattttaagtgc 52677044  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 352 - 429
Target Start/End: Original strand, 9778864 - 9778941
Alignment:
Q  352 ccaatttaattgagttatttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggtttt 429  Q
    ||||||||| ||| || |||  ||||||||| ||||||||||||| ||||||||| || || |||||||||| |||||    
T  9778864 ccaatttaaatgattttttttttcatttcacacttattaagaaaagtatattagtgaaggaaagagaaaaattgtttt 9778941  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 357 - 421
Target Start/End: Original strand, 39258205 - 39258269
Alignment:
Q  357 ttaattgagttatttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaa 421  Q
    |||||||||| ||||||| ||||||| | |||||| |||||| ||| ||| ||||||||||||||    
T  39258205 ttaattgagtcatttgcttatttcacacatattaaaaaaaatgtataagtgaatgagagagaaaa 39258269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 435
Target Start/End: Complemental strand, 42132972 - 42132909
Alignment:
Q  373 ctcatttcacgcttattaagaaaaa-tatattagtaaatgagagagaaaaatggttttgagtgc 435  Q
    |||||||||| |||||||||||||| | ||| ||| || ||||||||||||||| |||||||||    
T  42132972 ctcatttcacacttattaagaaaaagtgtataagtgaaagagagagaaaaatgggtttgagtgc 42132909  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 423
Target Start/End: Original strand, 42670333 - 42670384
Alignment:
Q  372 gctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaat 423  Q
    ||||||||||| | ||||||||||||| ||| | ||||||||||||||||||    
T  42670333 gctcatttcacacgtattaagaaaaatgtataaataaatgagagagaaaaat 42670384  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 436
Target Start/End: Original strand, 49218732 - 49218797
Alignment:
Q  372 gctcatttcacgcttattaagaaaaa-tatattagtaaatgagagagaaaaatggttttgagtgcc 436  Q
    ||||||||||| |||||||||||||| | ||| ||| || ||||||||||||||| || |||||||    
T  49218732 gctcatttcacacttattaagaaaaagtgtataagtgaaagagagagaaaaatgggttagagtgcc 49218797  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 435
Target Start/End: Complemental strand, 49448984 - 49448935
Alignment:
Q  386 tattaagaaaaatatattagtaaatgagagagaaaaatggttttgagtgc 435  Q
    ||||||||||||| ||| ||| || ||||||||||||||||||| |||||    
T  49448984 tattaagaaaaatgtataagtgaaggagagagaaaaatggttttaagtgc 49448935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 440
Target Start/End: Original strand, 4360354 - 4360426
Alignment:
Q  368 atttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggttttgagtgcctttg 440  Q
    ||||| ||||||||| | ||||||||||||  ||| | | ||||| |||||||||||||||| ||||| ||||    
T  4360354 atttgttcatttcacacatattaagaaaaaagtataaatgaatgaaagagaaaaatggttttaagtgcttttg 4360426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 440
Target Start/End: Complemental strand, 33047649 - 33047581
Alignment:
Q  372 gctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggttttgagtgcctttg 440  Q
    ||||||||||| | ||||||||||||| ||| |  |||  |||||||||||||||||| ||||| ||||    
T  33047649 gctcatttcacacctattaagaaaaatgtataaacaaagaagagagaaaaatggttttaagtgcttttg 33047581  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 431
Target Start/End: Original strand, 40020891 - 40020957
Alignment:
Q  368 atttgctcatttcacgcttattaagaaaaatatatt---agtaaatgagagagaaaaatggttttga 431  Q
    ||||| ||||||||| | ||||||||||||| |||    ||| ||||||||||||||||||||||||    
T  40020891 atttggtcatttcacacatattaagaaaaatgtatactaagtgaatgagagagaaaaatggttttga 40020957  T

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Target: scaffold0034 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 435
Target Start/End: Complemental strand, 98986 - 98919
Alignment:
Q  368 atttgctcatttcacgcttattaagaaaaatatattagtaaatgagagagaaaaatggttttgagtgc 435  Q
    ||||| ||||||||| | ||||||||||||| ||| | | ||||||||||||||||| |||| |||||    
T  98986 atttgttcatttcacacatattaagaaaaatgtataaatgaatgagagagaaaaatgattttaagtgc 98919  T

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Target: scaffold0009 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 395
Target Start/End: Complemental strand, 220219 - 220156
Alignment:
Q  332 aaaataatactccctcggttccaatttaattgagttatttgctcatttcacgcttattaagaaa 395  Q
    |||||||||||||||| ||  || ||||| ||||||||| ||||||||||| |||| |||||||    
T  220219 aaaataatactccctccgtcgcattttaactgagttattggctcatttcacacttactaagaaa 220156  T

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Target: scaffold0024 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 7845 - 7882
Alignment:
Q  1 tttgtaggaccccgtgaccccacaacaccggtagccgct 39  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  7845 tttgtaggaccc-gtgaccccacaacaccggtagccgct 7882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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