View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2983_low_5 (Length: 426)
Name: NF2983_low_5
Description: NF2983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2983_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 3688730 - 3688804
Alignment:
| Q |
1 |
aaagtgaaatctaatgggtcttctaggtgttcttctgctatttctgattatcaaagctcttctcgtgaaggtgaa |
75 |
Q |
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| T |
3688730 |
aaagtcaaatctaatgggtcttctaggtgttcttctgctatttctgattatcaaagctcttctcctgaaggtgaa |
3688804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 201 - 251
Target Start/End: Original strand, 3688933 - 3688983
Alignment:
| Q |
201 |
aaatataaaaaccaaattatgacattttcttggtatttgtttgattgttga |
251 |
Q |
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| T |
3688933 |
aaatataaaaatcaaattatgacattttcttggtatttgtttgtttgttga |
3688983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 339 - 381
Target Start/End: Original strand, 3688983 - 3689025
Alignment:
| Q |
339 |
aagtttatgatattctacagagtttgaatgattgtaaccaagg |
381 |
Q |
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| T |
3688983 |
aagtttatgatattctacagagtttgaatgattgtaaccaagg |
3689025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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