View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2983_low_6 (Length: 379)
Name: NF2983_low_6
Description: NF2983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2983_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 131; Significance: 7e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 1592949 - 1592709
Alignment:
| Q |
1 |
ttcccattgataagaacacaatctggtattccaagg-cttttccaccatcaagtgttgatcttagagcctatatttatcaaacaaacatacaaaatagca |
99 |
Q |
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| T |
1592949 |
ttcccattgataagaacaccatctggtattccaaggtcttttccaccgtcaagtgttgatcttagagcctatatttatcaaaaaaacatacaaaatagca |
1592850 |
T |
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| Q |
100 |
attaaatatcaataaaaa--cacaacattttcaaaatttatagaagaaagttaaatgaaaggcaataactaaacgtgtagtcctgatt-----aat--cc |
190 |
Q |
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| T |
1592849 |
atcaaatatcaataaaaactcacaacatcttcagaatttacagaagaaagtctaatgaaaggtgataactaaccgtgtagtcctgagtataccaatcacc |
1592750 |
T |
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| Q |
191 |
aatcataatgaaaattttgccgtcgggctgcgcgaaaggaa |
231 |
Q |
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| T |
1592749 |
aatcataatgaaaatttcaccgtcgggctgcgcgaaaggaa |
1592709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 6097846 - 6097967
Alignment:
| Q |
1 |
ttcccattgataagaacacaatctggta---ttccaaggcttttccaccatcaagtgttgatcttagagcctatatttatcaaacaaacatacaaaatag |
97 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6097846 |
ttcccattgataagaacacaatctggtactattccaaggcttttccaccatcaaatgttgatcttagagcctatatttatcaaacaaacatacaaaatag |
6097945 |
T |
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| Q |
98 |
caattaaatatcaataaaaaca |
119 |
Q |
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|||||||||||||||||||||| |
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| T |
6097946 |
caattaaatatcaataaaaaca |
6097967 |
T |
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