View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2983_low_8 (Length: 347)
Name: NF2983_low_8
Description: NF2983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2983_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 2 - 331
Target Start/End: Original strand, 39986620 - 39986947
Alignment:
| Q |
2 |
gatgatgatgatcatcatcatcataagaaaaatgagaaacataagaagaagaaatgctatgtgtcgtttgatttagagtatgagtcgcatgagtcgatgg |
101 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
39986620 |
gatgatgatgatgatgatcatcataagaaaaatgatcaacataagaagaagaaatgctatgtgtcttttgatttagggtatgagtcgcatgagtcgatgg |
39986719 |
T |
|
| Q |
102 |
atgagatggaaaagaataggaggttctgggaagcttgtttggcatcttgattcaatattgaatgtagtatttgcttaggctgcttttcttccatatttaa |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39986720 |
atgagatggaaaagaataggaggttctgggaagcttgtttggcatcttgattcaatattgaatgtagtatttgcttaggctgcttttcttccatatttaa |
39986819 |
T |
|
| Q |
202 |
ttcccttagcttaactttaaatataaattaataacaatcattttttaatatgtgtccctctcgccatataataattattatttttgttattaattgtatg |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
39986820 |
ttcccttagcttaactttaaatataaattaataacaatcattttttaatatgtgtccctctcgccatataataattattatttttgttattaattgcatg |
39986919 |
T |
|
| Q |
302 |
acacatgtatgtattttatctacattaatt |
331 |
Q |
| |
|
||||| ||||||||||||||||||||||| |
|
|
| T |
39986920 |
acaca--tatgtattttatctacattaatt |
39986947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 88 - 191
Target Start/End: Complemental strand, 37622435 - 37622332
Alignment:
| Q |
88 |
gcatgagtcgatggatgagatggaaaagaataggaggttctgggaagcttgtttggcatcttgattcaatattgaatgtagtatttgcttaggctgcttt |
187 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||| |||||||| | |||| |
|
|
| T |
37622435 |
gcatgaatcgatggatgagatggaaaagaataggaggttctgggaagcatgcttggcatcttgattcaatattgaatatagtatatgcttaggtttcttt |
37622336 |
T |
|
| Q |
188 |
tctt |
191 |
Q |
| |
|
|||| |
|
|
| T |
37622335 |
tctt |
37622332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 153
Target Start/End: Complemental strand, 43879633 - 43879581
Alignment:
| Q |
101 |
gatgagatggaaaagaataggaggttctgggaagcttgtttggcatcttgatt |
153 |
Q |
| |
|
||||||| ||||||||| ||| || |||||||||||||||||||||||||| |
|
|
| T |
43879633 |
gatgagaaggaaaagaacaggctcttttgggaagcttgtttggcatcttgatt |
43879581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University