View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2984_high_37 (Length: 214)
Name: NF2984_high_37
Description: NF2984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2984_high_37 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 176; Significance: 5e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 14 - 197
Target Start/End: Complemental strand, 17500341 - 17500158
Alignment:
| Q |
14 |
aatataatcaactgaataaaatttaaagagcataacgtacgcactagtccgtgggttctggacattaaaatactagcgacaaacctgtgctaaaaatgga |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17500341 |
aatataatcaactgaataaaatttaaagagcataacgtacgcactagtccatgggttctggacattaaaatactagcgacaaacctgtgctaaaaatgga |
17500242 |
T |
|
| Q |
114 |
ccgatgctctgcataacatcgaagcacatttacaatcgttaatgagtctgtgcttttaatatctcatcgaaaatatttgtattt |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
17500241 |
ccgatgctctgcataacatcgaagcacatttacaatcgttaatgagtctgtgtttttaatatctcatcgaaaatatttgtattt |
17500158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 14 - 197
Target Start/End: Original strand, 17552873 - 17553056
Alignment:
| Q |
14 |
aatataatcaactgaataaaatttaaagagcataacgtacgcactagtccgtgggttctggacattaaaatactagcgacaaacctgtgctaaaaatgga |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17552873 |
aatataatcaactgaataaaatttaaagagcataacgtacgcactagtccatgggttctggacattaaaatactagcgacaaacctgtgctaaaaatgga |
17552972 |
T |
|
| Q |
114 |
ccgatgctctgcataacatcgaagcacatttacaatcgttaatgagtctgtgcttttaatatctcatcgaaaatatttgtattt |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
17552973 |
ccgatgctctgcataacatcgaagcacatttacaatcgttaatgagtctgtgtttttaatatctcatcgaaaatatttgtattt |
17553056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 8e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 14 - 139
Target Start/End: Complemental strand, 1932417 - 1932292
Alignment:
| Q |
14 |
aatataatcaactgaataaaatttaaagagcataacgtacgcactagtccgtgggttctggacattaaaatactagcgacaaacctgtgctaaaaatgga |
113 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
1932417 |
aatataatcaactgaagaaaaattaaagagcataacgtacgcactagtccatgggttctggacattaaaatactagcaacaaacccgtgctaaaaatgga |
1932318 |
T |
|
| Q |
114 |
ccgatgctctgcataacatcgaagca |
139 |
Q |
| |
|
||||||||||||||| |||||||||| |
|
|
| T |
1932317 |
ccgatgctctgcatagcatcgaagca |
1932292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 138 - 197
Target Start/End: Complemental strand, 1932270 - 1932211
Alignment:
| Q |
138 |
cacatttacaatcgttaatgagtctgtgcttttaatatctcatcgaaaatatttgtattt |
197 |
Q |
| |
|
||||||| ||||||||||||| |||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
1932270 |
cacatttgcaatcgttaatgaatctgtgtttttaatatcttatcgaaaatatttgtattt |
1932211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University