View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2984_high_4 (Length: 434)
Name: NF2984_high_4
Description: NF2984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2984_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 269 - 416
Target Start/End: Complemental strand, 8385609 - 8385462
Alignment:
| Q |
269 |
gcattgcttcatcttctctttcactctctcaccattctcacgccatactcaaatccgcttgcaccaccactctctaccctgaactatgtttctcagccat |
368 |
Q |
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| T |
8385609 |
gcattgcttcatcttctctttcactctctcaccattctcacgccatactcaaatccgcttgcaccaccactctctaccctgaactatgtttctcagccat |
8385510 |
T |
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| Q |
369 |
ttcctctgaaccaaacataactcataaaatcaccaaccacaaagatgt |
416 |
Q |
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| T |
8385509 |
ttcctccgaaccaaacataactcataaaatcaccaaccacaaagatgt |
8385462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 106 - 229
Target Start/End: Complemental strand, 8385772 - 8385649
Alignment:
| Q |
106 |
aaaccaatcatgaacaaaataaaacaatccctcgccggaatctcgaattccggcaacaagaaaaaactcctcatctccctctttacaacccttctcattg |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8385772 |
aaaccaatcatgaacaaaataaaacaatccctcgccggaatctcgaattccggcaacaagaaaaaactcctcatctccctctttacaacccttctcattg |
8385673 |
T |
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| Q |
206 |
tagcttccatagtagccattgttg |
229 |
Q |
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|||||||||||||||||||||||| |
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| T |
8385672 |
tagcttccatagtagccattgttg |
8385649 |
T |
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