View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2984_high_6 (Length: 393)
Name: NF2984_high_6
Description: NF2984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2984_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 16 - 321
Target Start/End: Original strand, 41695875 - 41696180
Alignment:
| Q |
16 |
caatgttcatccttaggctgcttattgatctcaaaccatcatctttatctaacccttcctccatttttgcttgtgtttggagtattaatgaaaattctaa |
115 |
Q |
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| T |
41695875 |
caatgttcatccttaggctgcttattgatctcaaaccatcatctttatctaacccttcctccatttttgcttgtgtttggagtattaatgaaaattctaa |
41695974 |
T |
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| Q |
116 |
taggtaggtgttggtagggaaattttgatagtagtaccacaaaactttatgtgtggaagttggaagggttgaggtattttattgtctccataattggaaa |
215 |
Q |
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| T |
41695975 |
taggtaggtgttggtagggaaattttgatagtagtaccacaaaactttatgtgtggaagttggaagggttgaggtattttattgtctccataattggaaa |
41696074 |
T |
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| Q |
216 |
ggatgtgatggattagatgaatgatagtccaattggtgaagtgtcgtcctatgtttaatgtcaattaaatagtaattggttttaaaataaaaatgacact |
315 |
Q |
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| T |
41696075 |
ggatgtgatggattagatgaatgatagtccaattggtgaagtgtcgtcctatgtttaatgtcaattaaatagtaattggttttaaaataaaaatgacgct |
41696174 |
T |
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| Q |
316 |
agactt |
321 |
Q |
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|||||| |
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| T |
41696175 |
agactt |
41696180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 340 - 382
Target Start/End: Original strand, 41696200 - 41696242
Alignment:
| Q |
340 |
taaatttaccgagcctaaaatttgaatccacatcaaacatgat |
382 |
Q |
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| T |
41696200 |
taaatttacggagcctaaaatttgaatctacatcaaacatgat |
41696242 |
T |
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