View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2984_high_8 (Length: 382)
Name: NF2984_high_8
Description: NF2984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2984_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 146; Significance: 8e-77; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 14 - 195
Target Start/End: Complemental strand, 39518832 - 39518648
Alignment:
| Q |
14 |
cacaaacaaaaaggcacttcattgctcgttaaatttgggaaatcatgcaatcnnnnnnnaacatttgctgaatcccaaacccagtattcgttcagtaatt |
113 |
Q |
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| T |
39518832 |
cacaaacaaaaaggcacttcattgctcgttaaatttgggaaatcatgcaatctttttttaacatttgctgaatcccaaacccagtgttcgttcagtaatt |
39518733 |
T |
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| Q |
114 |
gacagtatggattaataccac---tacaccctcactctttagtttaccaatacttggagcaaaccacagataacataactgaatt |
195 |
Q |
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| T |
39518732 |
gacagtatggattaataccaccactacaccctcactctttagtttaccaatacttggagcaaaccacagataacataactgaatt |
39518648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 224 - 371
Target Start/End: Complemental strand, 39518650 - 39518503
Alignment:
| Q |
224 |
atttggtatcctatttggaacttcaaaaccaaaccttatgttacaaattacgacacaaactgataaccacaatcataattcgaaagatgacgcccacatc |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39518650 |
atttggtatcctatttggaacttcaaaaccaaaccttatgttacaaattacgacacaaactgataaccacaatcataattcgaaagatgacgcccacatc |
39518551 |
T |
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| Q |
324 |
aacactttatttaaataagtgtgctaacttaatataatggaccttcat |
371 |
Q |
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| T |
39518550 |
aacactttatttaaataagtatgctaacttaataaaatggaccttcat |
39518503 |
T |
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