View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2984_low_11 (Length: 384)
Name: NF2984_low_11
Description: NF2984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2984_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 21 - 320
Target Start/End: Original strand, 9870855 - 9871149
Alignment:
| Q |
21 |
atgaccgtagattatcatgcgaatataaatgtgaactgtaaattacatcaacaaagcaaaatgattcctactatattcttttagatatgtcgatttcaat |
120 |
Q |
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| T |
9870855 |
atgaccgtagattatcatgcgaatataaatgtgaactgtaaattacatcaacaaagcaaaatgattcctactatattcttttagacatgtcgatttcaat |
9870954 |
T |
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| Q |
121 |
ttcgacctacatggtttttatttagttatataatgttttaaaaaacattataagtataaacaataactccaaggtcaaatatatatgtcatcgtcaatag |
220 |
Q |
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| T |
9870955 |
ttcgacctacatggtttttatttagttatataatgttttaaaaaacattataagtataaacaataattccaaggtcaaatttatatgtcatcgtcaatag |
9871054 |
T |
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| Q |
221 |
tttaaagggaaaaattgatacagcacaagagttatcggcataccaaaaataattttcctttagaaaaaagagttcaagtctaagaagctttgacaagtga |
320 |
Q |
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| T |
9871055 |
tttaaagggaaaaattgatacagcacaagagttatcggtatagaaaaaaaaa-----aattaaagaaaagagttcaagtctaagaagctttgacaagtga |
9871149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 34 - 269
Target Start/End: Original strand, 9876406 - 9876642
Alignment:
| Q |
34 |
atcatgcgaatataaatgtgaactgtaaattacatcaacaaag-caaaatgattcctactatattcttttagatatgtcgatttcaatttcgacctacat |
132 |
Q |
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| T |
9876406 |
atcatgcgcataaaaatgtgaactccaaattacactaacaaaggcaaaatgattcctactataatcttttagacatgtccatttcaatatggacctacat |
9876505 |
T |
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| Q |
133 |
ggtttttatttagttatataatgttttaaaaaacattataagtataaacaataactccaaggtcaaatatatatgtcatcgtcaatagtttaaagggaaa |
232 |
Q |
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| T |
9876506 |
ggattttatctacttatataatgttttaaaaaacattatttggataaagaatacttccaaggtcaaatatatacgtcaccttctatagtttaaagggaaa |
9876605 |
T |
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| Q |
233 |
aattgatacagcacaagagttatcggcataccaaaaa |
269 |
Q |
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| T |
9876606 |
cgttgatatatcacaagagttatcgacataccaaaaa |
9876642 |
T |
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