View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2984_low_13 (Length: 379)
Name: NF2984_low_13
Description: NF2984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2984_low_13 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 16410348 - 16410706
Alignment:
| Q |
1 |
agacaaacccctaacatagtgcatatagccactactatattttggtnnnnnnn-acacctccttcccttgtgtcaatcatacaatcctttcataagatat |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16410348 |
agacaaacccctaacatagtgcatatagccactactatattttggtcccccctcacacctc--tcccttgtgtcaatcatacaatcctttcataagatat |
16410445 |
T |
|
| Q |
100 |
gaaaaattaaattacttgatatccaatctagtcta--ctataattgtagggttagaaagacttagcccctaaaattaacaaaaaattgaaattatttcca |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
16410446 |
gaaaaattaaattacttgatatccaatctagtctctcctataattgtagggttagaaagacttagcccctaaaattaacaaaaatttgaaattatttcca |
16410545 |
T |
|
| Q |
198 |
acattgaaagagttccaatcatattagcatgtgtttggatgcacgtttagcacccctttctcgcgtcacaatgcatgttccactctgataatcagaagca |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||| ||| ||||||||||||||| |
|
|
| T |
16410546 |
acattgaaagagttccaatcatattagcatgtgtttggatgcacgtttagcacccctttctcacgtcccaatgtatgttcgactgtgataatcagaagca |
16410645 |
T |
|
| Q |
298 |
acaaaattcagcttttacgttgatgtagtttttcaccttacgtttggttgtcgaagtcgcaag |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
16410646 |
acaaaattcagcttttacgttgatgtagtttttcaccttacatttggttgt--aagtcgcaag |
16410706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 323
Target Start/End: Complemental strand, 9665226 - 9665134
Alignment:
| Q |
232 |
ttggatgcacgtttagcacccctt-tctcgcgtcacaatgcatgttccactctgataatcagaagcaacaaaattcagcttttacgttgatgt |
323 |
Q |
| |
|
||||||| ||| |||||| || || ||||||||| ||||||||||||| | ||||||| |||| |||||||| |||||| || |||||||| |
|
|
| T |
9665226 |
ttggatggacggttagcatccattatctcgcgtcccaatgcatgttcctccgtgataataagaaacaacaaaacccagcttctatgttgatgt |
9665134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 221 - 329
Target Start/End: Original strand, 7898762 - 7898870
Alignment:
| Q |
221 |
ttagcatgtgtttggatgcacgtttagcacccctttctcgcgtcacaatgcatgttccactctgataatcagaagcaacaaaattcagcttttacgttga |
320 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| || || || |||||||| || |||| ||||||| ||||||||||||||| || || || ||||| |
|
|
| T |
7898762 |
ttagtatgtgtttggatgcacgtttagcacccctcccttgcatctcaatgcatatttcactgtgataattagaagcaacaaaatttagtttctatgttga |
7898861 |
T |
|
| Q |
321 |
tgtagtttt |
329 |
Q |
| |
|
||| ||||| |
|
|
| T |
7898862 |
tgtggtttt |
7898870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University