View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2984_low_14 (Length: 374)
Name: NF2984_low_14
Description: NF2984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2984_low_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 356
Target Start/End: Complemental strand, 1112892 - 1112561
Alignment:
| Q |
18 |
acaacaacaaacatccaaatatccagcatttcaataatcatgaatgtcaaaatcaatgtatgatataatgatagaaagacaactgcagtagcaaaatgaa |
117 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1112892 |
acaacaacaaacatccaaatgtccagcatttcaataatcatgaatgtcaaaatcaatgtatgatataatgatagaaagacaatagcagtagcaaaatgaa |
1112793 |
T |
|
| Q |
118 |
tgtcaatacctaattctcaatataattaatgattttattccttctgatggtgctttgttattcttttacttctgttttgtagctaacaattaagttgtgt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1112792 |
tgtcaatacctaattctcaatataattaatgattttattctttctgatggtgctttgttattcttttacttctgctttgtagctaacaattaagttgtgt |
1112693 |
T |
|
| Q |
218 |
tgct----agaaatgcttacaggttcagcgggagaagata-tacatctannnnnnnnnacttgtcattttacttgatttcgaagttcaacggaacaataa |
312 |
Q |
| |
|
| || |||||||||||||||||||||||||||||||| | |||||| | | |||||||||||||||||||||||||||||||||| |
|
|
| T |
1112692 |
ttctagaaagaaatgcttacaggttcagcgggagaagatattccatcta------------tttttttttacttgatttcgaagttcaacggaacaataa |
1112605 |
T |
|
| Q |
313 |
tttttattctcaataattaccatcaatccaaacgggtatagatt |
356 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1112604 |
tttttattgtcaataattaccatcaatccaaacgggtagagatt |
1112561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 26136094 - 26136151
Alignment:
| Q |
22 |
caacaaacatccaaatatccagcatttcaataatcatgaatgtcaaaatcaatgtatg |
79 |
Q |
| |
|
||||||| ||||||| |||| || ||||| ||||||||||||||||||||||||||| |
|
|
| T |
26136094 |
caacaaatctccaaatgtccaacaattcaacaatcatgaatgtcaaaatcaatgtatg |
26136151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University