View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2984_low_17 (Length: 344)

Name: NF2984_low_17
Description: NF2984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2984_low_17
NF2984_low_17
[»] chr6 (9 HSPs)
chr6 (67-326)||(33869488-33869750)
chr6 (11-72)||(33866023-33866084)
chr6 (182-317)||(29300419-29300554)
chr6 (193-326)||(25549439-25549569)
chr6 (193-326)||(26087194-26087324)
chr6 (278-325)||(34257885-34257932)
chr6 (182-237)||(25490554-25490609)
chr6 (71-204)||(29145545-29145679)
chr6 (182-236)||(29151829-29151883)
[»] chr4 (1 HSPs)
chr4 (85-243)||(54294732-54294892)
[»] chr7 (1 HSPs)
chr7 (59-161)||(42446574-42446677)
[»] chr8 (1 HSPs)
chr8 (140-243)||(5709589-5709693)
[»] chr3 (1 HSPs)
chr3 (140-243)||(2885726-2885830)
[»] chr2 (1 HSPs)
chr2 (140-243)||(16186218-16186322)


Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 67 - 326
Target Start/End: Original strand, 33869488 - 33869750
Alignment:
Q  67 catacttccaattagagaaataagtagttaattgtttttattgttttcaaaagaagtatatggttgtggttattgggatattacctagtaaacaatgcga 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33869488 catacttccaattagagaaataagtagttaattgtttttattgttttcaaaagaagtatatggttgtggttattgggatattacctagtaaacaatgcga 33869587  T
Q  167 cttgtcaattgtgcttatcacaattgttgtcaagtaaactaaaaaactactttatcttgcttttgcattttgattttccatgtttactcgttctgtttgc 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  33869588 cttgtcaattgtgcttatcacaattgttgtcaagtaaactaaaaaactactttatcttgcttttgcattttgattttccatgtttactcgttctgttcgc 33869687  T
Q  267 atagt---cttatctggtttcaatatcaataaaaagagtgatcttttgcctttaccaaatgac 326  Q
    ||| |    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33869688 atacttaagttatctggtttcaatatcaataaaaagagtgatcttttgcctttaccaaatgac 33869750  T

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Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 33866023 - 33866084
Alignment:
Q  11 cagagatggaagtaagaatatttattttttctcttggtgaacctgaagaaggaaagcatact 72  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  33866023 cagagatggaagtaagaatatttattttttctcttggtgtacctgaagaaggaaagcatact 33866084  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 182 - 317
Target Start/End: Original strand, 29300419 - 29300554
Alignment:
Q  182 tatcacaattgttgtcaagtaaactaaaaaactactttatcttgcttttgcattttgattttccatgtttactc--gttctgtttgcatagtcttatctg 279  Q
    |||||||||| |||||||||||||||  ||||||||| | |||||||||||||||| |||||  ||||||||||  ||| | ||| || |  ||||||||    
T  29300419 tatcacaattattgtcaagtaaactaggaaactacttgaacttgcttttgcatttttattttgaatgtttactcttgttttattttcaaa--cttatctg 29300516  T
Q  280 gtttcaatatcaataaaaagagtgatcttttgccttta 317  Q
    | ||| |||||||||||| || |||| |||||| ||||    
T  29300517 gcttctatatcaataaaatgaatgatattttgctttta 29300554  T

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Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 326
Target Start/End: Complemental strand, 25549569 - 25549439
Alignment:
Q  193 ttgtcaagtaaactaaaaaactactttatcttgcttttgcattttgattttccatgtttactcgttctgtttgcatagtcttatctggtttcaatatcaa 292  Q
    |||||||||| | ||| ||||||||| |||||||||||||||||| | |||  || || ||||||| | || ||| |  ||||||||||||| |||||||    
T  25549569 ttgtcaagtatattaataaactacttgatcttgcttttgcatttttagtttgaatctt-actcgttttattcgcaaa--cttatctggtttctatatcaa 25549473  T
Q  293 taaaaagagtgatcttttgcctttaccaaatgac 326  Q
    ||||| || ||| |||||||||||||| ||||||    
T  25549472 taaaatgaatgaccttttgcctttaccgaatgac 25549439  T

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Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 326
Target Start/End: Complemental strand, 26087324 - 26087194
Alignment:
Q  193 ttgtcaagtaaactaaaaaactactttatcttgcttttgcattttgattttccatgtttactcgttctgtttgcatagtcttatctggtttcaatatcaa 292  Q
    |||||||||| ||||| ||||||||| |||||||||||||||||| | |||  || || ||||||| | || ||| |  | ||||||||||| |||||||    
T  26087324 ttgtcaagtatactaagaaactacttgatcttgcttttgcatttttagtttgaatctt-actcgttttattcgcaaa--catatctggtttctatatcaa 26087228  T
Q  293 taaaaagagtgatcttttgcctttaccaaatgac 326  Q
    ||||| || ||| |||||||||||||| ||||||    
T  26087227 taaaatgaatgaccttttgcctttaccgaatgac 26087194  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 278 - 325
Target Start/End: Complemental strand, 34257932 - 34257885
Alignment:
Q  278 tggtttcaatatcaataaaaagagtgatcttttgcctttaccaaatga 325  Q
    ||||||| ||||||||||||||| |||||||||||||||||| |||||    
T  34257932 tggtttctatatcaataaaaagattgatcttttgcctttaccgaatga 34257885  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 182 - 237
Target Start/End: Original strand, 25490554 - 25490609
Alignment:
Q  182 tatcacaattgttgtcaagtaaactaaaaaactactttatcttgcttttgcatttt 237  Q
    |||||||||| ||||||| || ||||| || |||||| ||||||||||||||||||    
T  25490554 tatcacaattattgtcaattatactaagaatctacttgatcttgcttttgcatttt 25490609  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 204
Target Start/End: Original strand, 29145545 - 29145679
Alignment:
Q  71 cttccaattagagaaataagtagttaattgtttttattgttttcaa-aagaagtatatggttgtggttattgggatattacctagtaaacaatgcgactt 169  Q
    ||||||||| ||| |  |||||| ||||||||||| ||||| |||  |||| ||||||| |||||||| ||| |||||||| |  ||  |||   |  ||    
T  29145545 cttccaattggaggagcaagtagctaattgtttttcttgttatcaccaagaggtatatgattgtggttgttgagatattacattttatgcaaactggttt 29145644  T
Q  170 gtcaattgtgcttatcacaattgttgtcaagtaaa 204  Q
    ||||||||||| |||||||||| ||||||||||||    
T  29145645 gtcaattgtgcatatcacaattattgtcaagtaaa 29145679  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 236
Target Start/End: Complemental strand, 29151883 - 29151829
Alignment:
Q  182 tatcacaattgttgtcaagtaaactaaaaaactactttatcttgcttttgcattt 236  Q
    |||||||||| |||||||||||||||| | |||  || |||||||||||||||||    
T  29151883 tatcacaattattgtcaagtaaactaagacactggttgatcttgcttttgcattt 29151829  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 85 - 243
Target Start/End: Complemental strand, 54294892 - 54294732
Alignment:
Q  85 aataagtagttaattgtttttattgttttca-aaagaagtatatggttgtggtta-ttgggatattacctagtaaacaatgcgacttgtcaattgtgctt 182  Q
    ||||||| |||||||||| || |||||| || |||||| |||||| ||||||||| ||||| |||||||| ||| |||| | |||| |||||||||| ||    
T  54294892 aataagttgttaattgttattcttgtttacacaaagaattatatgattgtggttatttggggtattaccttgtagacaaagtgactcgtcaattgtgttt 54294793  T
Q  183 atcacaattgttgtcaagtaaactaaaaaactactttatcttgcttttgcattttgatttt 243  Q
     ||||||||  | | || | |||||| ||||||||| ||||| |||| ||||||| |||||    
T  54294792 gtcacaattaattttaattgaactaagaaactacttgatcttactttagcatttttatttt 54294732  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 161
Target Start/End: Original strand, 42446574 - 42446677
Alignment:
Q  59 aaggaaagcatacttccaattagagaaataagtagttaattgtttttattgttttca-aaagaagtatatggttgtggttattgggatattacctagtaa 157  Q
    ||||||| ||| ||||||||| ||| ||||| || |||||||||||| |||||||||  |||| ||||||| |||||||| ||| |||||||||| |||     
T  42446574 aaggaaaacattcttccaattggaggaataattaattaattgtttttcttgttttcaccaagaggtatatgattgtggttcttgagatattaccttgtat 42446673  T
Q  158 acaa 161  Q
    ||||    
T  42446674 acaa 42446677  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 243
Target Start/End: Complemental strand, 5709693 - 5709589
Alignment:
Q  140 tgggatattacctagtaaacaatgcgacttgtcaattg-tgcttatcacaattgttgtcaagtaaactaaaaaactactttatcttgcttttgcattttg 238  Q
    ||||||||||| | |||||||| | ||||| |||| || |||||| |||||||  |||||  |||| ||  ||||||||| ||||||||||||||||||     
T  5709693 tgggatattactttgtaaacaaagtgacttctcaaatggtgcttaccacaattcatgtcatttaaattatgaaactacttgatcttgcttttgcattttt 5709594  T
Q  239 atttt 243  Q
    |||||    
T  5709593 atttt 5709589  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 243
Target Start/End: Original strand, 2885726 - 2885830
Alignment:
Q  140 tgggatattacctagtaaacaatgcgacttgtcaattg-tgcttatcacaattgttgtcaagtaaactaaaaaactactttatcttgcttttgcattttg 238  Q
    ||||||||||| | |||||||| | ||||| |||| || |||||| |||||||  |||||  |||| ||  ||||||||| ||||||||||||||||||     
T  2885726 tgggatattactttgtaaacaaagtgacttctcaaatggtgcttaccacaattcatgtcatttaaattatgaaactacttgatcttgcttttgcattttt 2885825  T
Q  239 atttt 243  Q
    |||||    
T  2885826 atttt 2885830  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 243
Target Start/End: Complemental strand, 16186322 - 16186218
Alignment:
Q  140 tgggatattacctagtaaacaatgcgacttgtcaattg-tgcttatcacaattgttgtcaagtaaactaaaaaactactttatcttgcttttgcattttg 238  Q
    ||||||||||| | |||||||| | ||||| |||| || |||||| |||||||  |||||  |||| ||  ||||||||| ||||||||||||||||||     
T  16186322 tgggatattactttgtaaacaaagtgacttctcaaatggtgcttaccacaattcatgtcatttaaattatgaaactacttgatcttgcttttgcattttt 16186223  T
Q  239 atttt 243  Q
    |||||    
T  16186222 atttt 16186218  T

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