View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2984_low_19 (Length: 323)
Name: NF2984_low_19
Description: NF2984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2984_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 73 - 316
Target Start/End: Original strand, 13917963 - 13918199
Alignment:
| Q |
73 |
atatatatatgatcccatctattgtgttattattcactcgagattgatctacctttaaaatatatacataatactagattggtctaccaatgctcctcaa |
172 |
Q |
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| T |
13917963 |
atatatatatgatcccatctattgtgttattattcactcgagattggtctacctttaaaatatatacataatactagattggtctaccaatgctcctcaa |
13918062 |
T |
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| Q |
173 |
taacgtggcttatttgttctaaattcacgaattgatttaggccaatctaatatatgtatattttagtgnnnnnnnnnnnnnnnnnngcaacatagctttg |
272 |
Q |
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| T |
13918063 |
taacgtggcttatttgttctaaattcacgaatttattt-----gttcta--atatgtatattttagtgttttttctttttctttttgcaagatagctttg |
13918155 |
T |
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| Q |
273 |
tcgtgtttagaagtaacaaaaagaatatttgaatattttcttcg |
316 |
Q |
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| T |
13918156 |
tcgtgtttagaagtaacaaaaagaatatttgaatattttcttcg |
13918199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 13917846 - 13917910
Alignment:
| Q |
18 |
ataatgtgttgtaatgagttagtatttctatacactcgttaatatattttgcttaatatatatat |
82 |
Q |
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| T |
13917846 |
ataatgtgttgtaatgagttagtatttctatactctcgttaatatattttgcttaatatatatat |
13917910 |
T |
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