View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2984_low_22 (Length: 290)
Name: NF2984_low_22
Description: NF2984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2984_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 32 - 274
Target Start/End: Complemental strand, 27915440 - 27915199
Alignment:
| Q |
32 |
acatatggattatcttgatgtcaaaattatttctgaatcaacaagctcattacaactataaaacccagaattcattgattttctcaagagttataattta |
131 |
Q |
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| T |
27915440 |
acatacggattatcttgatgtcaaaattatttctgaatcaacaagctcattacacctataaaaccaagaattcattgattttctcaagagttataattta |
27915341 |
T |
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| Q |
132 |
tattaacttatttacaagcaaattaactctattctgtattcaa-ttaagatcctaaaattattaagaaaaatctgagtactagtatatgtcggtaactgg |
230 |
Q |
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||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
27915340 |
tattaacttatttacaagcaagttaactatattctgtattcaatttaagatcctaaaattattaagaaaaatctgagtactaacatatgtcggtaaatgg |
27915241 |
T |
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| Q |
231 |
ttttgtggtttatggtgcactttgtcagtgttcccacaatattg |
274 |
Q |
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| T |
27915240 |
--ttgtggttcatggtgcactttgtcagtgttcccacaatattg |
27915199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 16 - 274
Target Start/End: Complemental strand, 27910072 - 27909811
Alignment:
| Q |
16 |
atgaattgaattatatacatatggattatcttgatgtcaaaattatttctgaatcaacaagctcattacaactataaaacccagaattcattgattttct |
115 |
Q |
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|||||||||| | |||| || |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
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| T |
27910072 |
atgaattgaactttataaattgggattatcatgatgtcaaaattatttctgaatcaacaagctcattacacctataaaaccaagaattcattgattttct |
27909973 |
T |
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| Q |
116 |
caagagttataatttatattaacttatttacaagcaaattaactctattctgtattcaa-ttaagatcctaaaattattaagaaaaa--tctgagtacta |
212 |
Q |
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| T |
27909972 |
caagagttgtaatttatatta----atttacaagcaagttaactatattctgtattcaatttaagatcctaaaattattaagaaaaatctcttactacta |
27909877 |
T |
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| Q |
213 |
--gtatatgt--cggtaactggttttgtggtttatggtgcactttgtcagtgttcccacaatattg |
274 |
Q |
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||||||| || ||| ||||||||||||| ||| ||||||||||| |||||||||| |||||| |
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| T |
27909876 |
acatatatgtcgcgataaatggttttgtggttcatgatgcactttgtctgtgttcccacgatattg |
27909811 |
T |
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