View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2984_low_24 (Length: 286)
Name: NF2984_low_24
Description: NF2984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2984_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 19 - 271
Target Start/End: Complemental strand, 10187226 - 10186975
Alignment:
| Q |
19 |
gaatacgctgtctcttaggtgagttactacttagctcctcctttagtatgtcataacctttcttggtcatgtccacaatttttgcatcctttaatttttg |
118 |
Q |
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| T |
10187226 |
gaatacgctgtctcttaggtgagttactacttagctcctcctttagtatgtcataacctttcttggtcatgtccacaatttt-gcatcctttaatttttg |
10187128 |
T |
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| Q |
119 |
gaaggaagtagaaaccattggtgacgaaaaggttgacttaaatttgccaaacaatgattctgaagcattgccagacggagattcctcgtttttctcttcc |
218 |
Q |
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| T |
10187127 |
gaaggaagtagaaaccattggtgacgaaaaggttgacttaaatttgccaaacaatgattctgaagcattgccagacggagattcctcgtttttctcttcc |
10187028 |
T |
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| Q |
219 |
tcaggtgatttctgacttccttgctttgcatcagcattctgttttgttgaaaa |
271 |
Q |
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| T |
10187027 |
tcaggtgatttctgacttccttgctttgcatcagcattctgttttgttgaaaa |
10186975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 23 - 269
Target Start/End: Complemental strand, 28932957 - 28932711
Alignment:
| Q |
23 |
acgctgtctcttaggtgagttactacttagctcctcctttagtatgtcataacctttcttggtcatgtccacaatttttgcatcctttaatttttggaag |
122 |
Q |
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| T |
28932957 |
acgccgtctcttaggtggatcactacttagttcctcccttagtatgccataacctttcttggttatgtctacaatttttgcatcctttaatttttggaag |
28932858 |
T |
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| Q |
123 |
gaagtagaaaccattggtgacgaaaaggttgacttaaatttgccaaacaatgattctgaagcattgccagacggagattcctcgtttttctcttcctcag |
222 |
Q |
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| T |
28932857 |
gaagtagaaacatttggtgatgaaaaggttgacttaaatttgccaaacattgactctgaagtattaccagatgcaaattcctggtttttctcttcctcgg |
28932758 |
T |
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| Q |
223 |
gtgatttctgacttccttgctttgcatcagcattctgttttgttgaa |
269 |
Q |
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| T |
28932757 |
gtgatgtctgacttccttgctttgcatcagcatccagttttgttgaa |
28932711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 181; Significance: 8e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 25 - 269
Target Start/End: Original strand, 35121104 - 35121348
Alignment:
| Q |
25 |
gctgtctcttaggtgagttactacttagctcctcctttagtatgtcataacctttcttggtcatgtccacaatttttgcatcctttaatttttggaagga |
124 |
Q |
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||||||||||||||| ||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35121104 |
gctgtctcttaggtgtgttgccacttagttcctcctttagtatgtcataacctttcttggtcatgtccacaatttttgcatcctttaatttttggaagga |
35121203 |
T |
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| Q |
125 |
agtagaaaccattggtgacgaaaaggttgacttaaatttgccaaacaatgattctgaagcattgccagacggagattcctcgtttttctcttcctcaggt |
224 |
Q |
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||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| | |||||||| ||||||||||||||| ||| |
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| T |
35121204 |
agtagaaacttttggtgacgaaaaggttgacttaaattttccaaacaatgactctgaagcattgccagaagcagattcctggtttttctcttcctcgggt |
35121303 |
T |
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| Q |
225 |
gatttctgacttccttgctttgcatcagcattctgttttgttgaa |
269 |
Q |
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||| |||| ||||||||||||||||| |||| ||||||||||||| |
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| T |
35121304 |
gatgtctgtcttccttgctttgcatccgcatcctgttttgttgaa |
35121348 |
T |
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