View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2984_low_25 (Length: 268)

Name: NF2984_low_25
Description: NF2984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2984_low_25
NF2984_low_25
[»] chr8 (3 HSPs)
chr8 (14-65)||(13539508-13539559)
chr8 (14-65)||(13684915-13684966)
chr8 (210-264)||(27933755-27933809)
[»] chr4 (1 HSPs)
chr4 (209-240)||(7169476-7169507)
[»] chr5 (1 HSPs)
chr5 (198-242)||(26267255-26267299)
[»] chr3 (1 HSPs)
chr3 (209-257)||(8891136-8891184)


Alignment Details
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 13539508 - 13539559
Alignment:
Q  14 agagcttcgttatgatagggatagacataaaaagtagaaataatgctagcag 65  Q
    |||| ||| |||||||||||||| ||||||||||||||||||||||||||||    
T  13539508 agagtttcattatgatagggataaacataaaaagtagaaataatgctagcag 13539559  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 13684966 - 13684915
Alignment:
Q  14 agagcttcgttatgatagggatagacataaaaagtagaaataatgctagcag 65  Q
    |||| ||| |||||||||||||| ||||||||||||||||||||||||||||    
T  13684966 agagtttcattatgatagggataaacataaaaagtagaaataatgctagcag 13684915  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 264
Target Start/End: Complemental strand, 27933809 - 27933755
Alignment:
Q  210 gcaagtgtacggttctatcgaatagtaaaaatatcgacccacatgaagatgaagt 264  Q
    |||||||||||| |||||| | ||||||||||||||| ||||| |||| ||||||    
T  27933809 gcaagtgtacggctctatctagtagtaaaaatatcgatccacaagaagttgaagt 27933755  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 240
Target Start/End: Complemental strand, 7169507 - 7169476
Alignment:
Q  209 tgcaagtgtacggttctatcgaatagtaaaaa 240  Q
    ||||||||||||||||||||||||||||||||    
T  7169507 tgcaagtgtacggttctatcgaatagtaaaaa 7169476  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 26267299 - 26267255
Alignment:
Q  198 tgatacgattatgcaagtgtacggttctatcgaatagtaaaaata 242  Q
    |||||||||| ||||||| |||||||||||| | |||||||||||    
T  26267299 tgatacgattttgcaagtatacggttctatcaagtagtaaaaata 26267255  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 8891184 - 8891136
Alignment:
Q  209 tgcaagtgtacggttctatcgaatagtaaaaatatcgacccacatgaag 257  Q
    |||||||| || |||||||| | ||||||||||||||| ||||||||||    
T  8891184 tgcaagtgcacagttctatcaagtagtaaaaatatcgatccacatgaag 8891136  T

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