View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2984_low_28 (Length: 263)
Name: NF2984_low_28
Description: NF2984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2984_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 19 - 167
Target Start/End: Original strand, 14259876 - 14260024
Alignment:
| Q |
19 |
gtgtggtagtttttcttggaaagatcaagttatggaaaggtaagtaattaacagatttcacaattttactaacaaaggttaagactcatatctaatgtat |
118 |
Q |
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| T |
14259876 |
gtgtggtagtttttcttggaaagatcaagttatggaaaggtaagtaattaacagatttcacaattttactaacaaaggttaagactcatatctaatgtat |
14259975 |
T |
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| Q |
119 |
ttaattaaattcagggatacctaccgttcagaatcacggtgcttctacc |
167 |
Q |
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| T |
14259976 |
ttaattaaattcagggatacctaccgttcagaatcacggtgcttatacc |
14260024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 162 - 252
Target Start/End: Original strand, 14260093 - 14260183
Alignment:
| Q |
162 |
tctaccgtttatttttattataaacaatgtataaaaagatattannnnnnnnaaaaatctattcaatttattttttatattcaggatgatg |
252 |
Q |
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| T |
14260093 |
tctaccgtttatttttattataaacaatgtataaaaagatattattttttataaaaatctattcaatttattttttatattcaggatgatg |
14260183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 14265402 - 14265444
Alignment:
| Q |
19 |
gtgtggtagtttttcttggaaagatcaagttatggaaaggtaa |
61 |
Q |
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| T |
14265402 |
gtgtggtggtttttcttggaaagatcgagttatggaaatgtaa |
14265444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 22146094 - 22146052
Alignment:
| Q |
19 |
gtgtggtagtttttcttggaaagatcaagttatggaaaggtaa |
61 |
Q |
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| T |
22146094 |
gtgtggtagttttccttggaaagatcaaattatggtaaggtaa |
22146052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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