View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2984_low_30 (Length: 252)
Name: NF2984_low_30
Description: NF2984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2984_low_30 |
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| [»] scaffold0421 (1 HSPs) |
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| [»] scaffold0122 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 39437891 - 39437696
Alignment:
| Q |
1 |
tcgcaaagtgacatgtaatttggggcaaatgtaatattttaaatttaattgattatatataaattatgtaaacagttagaaattacattaattgtgatat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
39437891 |
tcgcaaagtgacatgtaatttggggcaaatgtaatattttaaatttaattgattatatataaattacgtaaacagttagaaattacattaattgtgatat |
39437792 |
T |
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| Q |
101 |
atatatccaattgaaaatatcaaatatgctagtatatccgccagtatatgtccgctaatacaaagtcgcctgttctttttggataagctcccccac |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
39437791 |
atatatccaattgaaaatatcaaatatgctagtatatccgccagtatatgtccgctaatacaaagccccctgttctttttggataagctcccccac |
39437696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0421 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: scaffold0421
Description:
Target: scaffold0421; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 4051 - 3813
Alignment:
| Q |
1 |
tcgcaaagtgacatgtaatttggggcaaatgtaatattttaaatttaattgattatatataaattatgtaaacagttagaaattacattaattgtgatat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
4051 |
tcgcaaagtgacatgtaatttggggcaaatgtaatattttaaatttcattgattatatataaattatgtcaatagttagaaattacattaattgtgatat |
3952 |
T |
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| Q |
101 |
atatatccaattgaaaatatcaaatatgctagtatatccgccagtatatgtccgctaatacaaagtcgcctgttctttttggataagctcccccactatt |
200 |
Q |
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| T |
3951 |
atacatccaattgaaaatatcaaatatgctagtatatccgccagtatatgtccgctaatacaaagccccctgttctttttagatcagctcccccattgtt |
3852 |
T |
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| Q |
201 |
gtagttcnnnnnnnggataatcttttaagactaatatat |
239 |
Q |
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| T |
3851 |
gcagttctttttttggataatcttttaagactaatatat |
3813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0122 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: scaffold0122
Description:
Target: scaffold0122; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 29066 - 28833
Alignment:
| Q |
1 |
tcgcaaagtgacatgtaatttggggcaaatgtaatattttaaatttaattgattatatataaattatgtaaacagttagaaattacattaattgtgatat |
100 |
Q |
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|||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||| |||| ||| || ||||||||||||||||||||||||||| |
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| T |
29066 |
tcgcaaagtgacatataatttggggtaaatgtaatattttaaatttcattgattatata--aattctgtcaatagttagaaattacattaattgtgatat |
28969 |
T |
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| Q |
101 |
atatatccaattgaaaatatcaaatatgctagtatatccgccagtatatgtccgctaatacaaagtcgcctgttctttttggataagctcccccactatt |
200 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||| | || |
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| T |
28968 |
atacatccaattgaaaatatcaaatatgctagtatatccgccagtatatgtccgctaatacaaagccccctgttctttttggatcagctcccccattgtt |
28869 |
T |
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| Q |
201 |
gtagttcnnnnnnnggataatcttttaagactaata |
236 |
Q |
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| T |
28868 |
gctgttcttattttggataatcttttaagactaata |
28833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 29 - 239
Target Start/End: Complemental strand, 14186686 - 14186476
Alignment:
| Q |
29 |
atgtaatattttaaatttaattgattatatataaattatgtaaacagttagaaattacattaattgtgatatatatatccaattgaaaatatcaaatatg |
128 |
Q |
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|||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
14186686 |
atgtaatattctaaatttcattgattatatataaattatgtaaatagttagaaattacattaattgtgatatatacatccaattgaaaatatcaaatatg |
14186587 |
T |
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| Q |
129 |
ctagtatatccgccagtatatgtccgctaatacaaagtcgcctgttctttttggataagctcccccactattgtagttcnnnnnnnggataatcttttaa |
228 |
Q |
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||||||||||| |||||||||||||||||| |||||| | |||||||||||||||| |||||||||||| ||| ||||| |||||||||||||| |
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| T |
14186586 |
ctagtatatccaccagtatatgtccgctaacacaaagccccctgttctttttggatcagctcccccactgttgcagttctttttttggataatcttttaa |
14186487 |
T |
|
| Q |
229 |
gactaatatat |
239 |
Q |
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||||||||||| |
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| T |
14186486 |
gactaatatat |
14186476 |
T |
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