View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2984_low_31 (Length: 250)
Name: NF2984_low_31
Description: NF2984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2984_low_31 |
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Alignment Details
Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 83 - 233
Target Start/End: Original strand, 24134014 - 24134164
Alignment:
| Q |
83 |
acttacattcgcctttggaaacgttcgactgaaaaatctccaataactgatgaatgggatattacaaagttgtttccctaacacgaaagcagccatacca |
182 |
Q |
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| T |
24134014 |
acttgcattcgcccttggaaacgttcgactgaaaaatctccaataactgatgggtggtatattacaaagttgtttccctagcatgaaagcagccttacga |
24134113 |
T |
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| Q |
183 |
gcacatgtgctcaaagcaccacataaggtagatctatttaaactttcgccg |
233 |
Q |
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| T |
24134114 |
acacatgtgctcaaagcaccacataaggtagatctatttacactttcgccg |
24134164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 149 - 233
Target Start/End: Original strand, 24136628 - 24136711
Alignment:
| Q |
149 |
aagttgtttccctaacacgaaagcagccataccagcacatgtgctcaaagcaccacataaggtagatctatttaaactttcgccg |
233 |
Q |
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| T |
24136628 |
aagtcgtttccctaacaccaaagcagccataccagcacatgtgcttaaggca-aacataaggtagatctatttaaatttttgccg |
24136711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 24134314 - 24134397
Alignment:
| Q |
149 |
aagttgtttccctaacacgaaagcagccataccagcacatgtgctcaaagcaccacataaggtagatctatttaaactttcgcc |
232 |
Q |
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| T |
24134314 |
aagttgtttccttaacaccaaagcagccataccagcacatgtgctcaaatgacaacataatgtatatctacataaactttcgcc |
24134397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 152 - 233
Target Start/End: Complemental strand, 45149272 - 45149191
Alignment:
| Q |
152 |
ttgtttccctaacacgaaagcagccataccagcacatgtgctcaaagcaccacataaggtagatctatttaaactttcgccg |
233 |
Q |
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| T |
45149272 |
ttgtttccctaacaccaaagcagccataccagcacatgtgctcaaagcacaacaaaaggtagatctatttaaacttttgccg |
45149191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 229
Target Start/End: Complemental strand, 45165633 - 45165556
Alignment:
| Q |
152 |
ttgtttccctaacacgaaagcagccataccagcacatgtgctcaaagcaccacataaggtagatctatttaaactttc |
229 |
Q |
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||||||||| ||| | |||||||| ||| ||||||||||||||||||||| || || |||| |||||||||||||| |
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| T |
45165633 |
ttgtttccccaactccaaagcagcaatatcagcacatgtgctcaaagcacaaccaaaagtagccctatttaaactttc |
45165556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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