View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2984_low_32 (Length: 250)
Name: NF2984_low_32
Description: NF2984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2984_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 10187350 - 10187590
Alignment:
| Q |
1 |
cgtaattgagttgcctacaatgtctctccattaagatatcttctctaccttttcatttaggttagacgccatcctgtatccaagaatttcgttaaatata |
100 |
Q |
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| T |
10187350 |
cgtaattgagttgcctacaatgtctctccattaagatatcttctctaccttttcatttaggttagacgccatcctgtatccaagaatttcgttaaatata |
10187449 |
T |
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| Q |
101 |
ttgatccagtgaagacaacgagccgagatgtacgttctactcctgtggtttttattctacttttttctgcctgcattttgttctttattaagcattctgc |
200 |
Q |
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| T |
10187450 |
ttgatccagtgaagacaacgagccgagatgtacgttctactcctgtggtttttattctacttttttctgcctgcattttgttctttattaagcattctgc |
10187549 |
T |
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| Q |
201 |
atgttgcctcggggcccttaaaaaatgttggtgttctgtgc |
241 |
Q |
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| T |
10187550 |
atgttgcctcggggcccttaaaaaatgttggtgttctgtgc |
10187590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 242
Target Start/End: Original strand, 28933230 - 28933308
Alignment:
| Q |
164 |
tttctgcctgcattttgttctttattaagcattctgcatgttgcctcggggcccttaaaaaatgttggtgttctgtgct |
242 |
Q |
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| T |
28933230 |
tttctacctgcattttgttctatattatgtattctgcaggtttcctcaggccccataaaaaatattggtgttgtgtgct |
28933308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 35120975 - 35120815
Alignment:
| Q |
1 |
cgtaattgagttgcctacaatgtctctccattaagatatcttctctaccttttcatttaggttagacgccatcctgtatccaagaatttcgttaaatata |
100 |
Q |
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| T |
35120975 |
cgtaattggattgcctacaatatctctccattaagatatcttctctaccttttcatttaggtgaaaagccatcctgcatccaagcgtttctttaaatata |
35120876 |
T |
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| Q |
101 |
ttgatccagtgaagacaacgagccgagatgtacgttctactcctgtggtttttattctact |
161 |
Q |
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||| ||||||||||||| ||||| || ||| ||||||||||| |||||||||||||| |
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| T |
35120875 |
ctgacccagtgaagacaaagagccaggaggtatattctactcctgatgtttttattctact |
35120815 |
T |
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