View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2984_low_33 (Length: 246)

Name: NF2984_low_33
Description: NF2984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2984_low_33
NF2984_low_33
[»] chr4 (3 HSPs)
chr4 (20-218)||(8529601-8529799)
chr4 (213-246)||(8528885-8528918)
chr4 (129-186)||(28859377-28859434)
[»] chr1 (1 HSPs)
chr1 (25-246)||(19312892-19313113)
[»] chr2 (1 HSPs)
chr2 (129-237)||(44884867-44884975)
[»] chr8 (1 HSPs)
chr8 (131-236)||(22187446-22187551)
[»] scaffold0011 (1 HSPs)
scaffold0011 (185-237)||(187980-188032)
[»] chr3 (2 HSPs)
chr3 (129-237)||(49641193-49641301)
chr3 (131-231)||(19822407-19822507)
[»] chr7 (2 HSPs)
chr7 (185-237)||(17243983-17244035)
chr7 (173-240)||(40064637-40064704)
[»] chr6 (1 HSPs)
chr6 (130-182)||(17753750-17753802)


Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 20 - 218
Target Start/End: Complemental strand, 8529799 - 8529601
Alignment:
Q  20 ctagacccaccacgcacaataaaccgagctttcaaaatacttctccaaacataactcggattatgtcccaaatttgcagtcaagtagttacaattaggaa 119  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8529799 ctagacccaccacgcacaataaactgagctttcaaattacttctccaaacataactcggattatgtcccaaatttgcagtcaagtagttacaattaggaa 8529700  T
Q  120 aatatctcactttaaaaatgcgagaaaccaaagagtttggttcagacatgaatttacacccttgctttccgagcatagctaaattgaaagcagacaagt 218  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  8529699 aatatctcgctttgaaaatgcgagaaaccaaagagtttggttcagacatgaatttccacccttgctttccgagcatagctaaattgaaagcaaacaagt 8529601  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 213 - 246
Target Start/End: Complemental strand, 8528918 - 8528885
Alignment:
Q  213 acaagtctttaaaacccattcctccgtgcgtctt 246  Q
    ||||||||||||||||||||||||||||||||||    
T  8528918 acaagtctttaaaacccattcctccgtgcgtctt 8528885  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 186
Target Start/End: Complemental strand, 28859434 - 28859377
Alignment:
Q  129 ctttaaaaatgcgagaaaccaaagagtttggttcagacatgaatttacacccttgctt 186  Q
    |||||||||||||||| || | |||||| ||||  ||||||||||| |||||||||||    
T  28859434 ctttaaaaatgcgagacacaagagagttgggttatgacatgaatttccacccttgctt 28859377  T

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Target: chr1 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 25 - 246
Target Start/End: Complemental strand, 19313113 - 19312892
Alignment:
Q  25 cccaccacgcacaataaaccgagctttcaaaatacttctccaaacataactcggattatgtcccaaatttgcagtcaagtagttacaattaggaaaatat 124  Q
    |||||||| ||||||||| | ||||||||| ||||||||||||||||||||| | |||||||||||||||||| ||| ||  ||||  || |||||||||    
T  19313113 cccaccacacacaataaatctagctttcaagatacttctccaaacataactccggttatgtcccaaatttgcattcaggtgattactgttgggaaaatat 19313014  T
Q  125 ctcactttaaaaatgcgagaaaccaaagagtttggttcagacatgaatttacacccttgctttccgagcatagctaaattgaaagcagacaagtctttaa 224  Q
    ||  |||| || || ||||| ||||||||||||||||||| ||||||||| || ||||| ||||| | |||||| ||||||||   || |||||||||||    
T  19313013 ctagctttgaagatacgagacaccaaagagtttggttcaggcatgaatttccaaccttgttttccaatcatagccaaattgaatatagtcaagtctttaa 19312914  T
Q  225 aacccattcctccgtgcgtctt 246  Q
    | |||||||||| |||||||||    
T  19312913 agcccattcctctgtgcgtctt 19312892  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 237
Target Start/End: Complemental strand, 44884975 - 44884867
Alignment:
Q  129 ctttaaaaatgcgagaaaccaaagagtttggttcagacatgaatttacacccttgctttccgagcatagctaaattgaaagcagacaagtctttaaaacc 228  Q
    |||| ||||| |||||||||||||| |||||||| |  || || || || || || ||||| |||||||||||||| |||||||| || |||||||||||    
T  44884975 ctttgaaaatccgagaaaccaaagaatttggttctgtaataaacttccaaccctgttttcctagcatagctaaattaaaagcagataaatctttaaaacc 44884876  T
Q  229 cattcctcc 237  Q
    ||| |||||    
T  44884875 catacctcc 44884867  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 236
Target Start/End: Complemental strand, 22187551 - 22187446
Alignment:
Q  131 ttaaaaatgcgagaaaccaaagagtttggttcagacatgaatttacacccttgctttccgagcatagctaaattgaaagcagacaagtctttaaaaccca 230  Q
    |||||||||||||||||||| |||| ||||||||  || ||||| || ||||| || || | ||| |||||||| || ||||| | ||||||||||||||    
T  22187551 ttaaaaatgcgagaaaccaaggagtctggttcagtaataaatttccatccttgtttacctaacattgctaaattaaatgcagagaggtctttaaaaccca 22187452  T
Q  231 ttcctc 236  Q
    | ||||    
T  22187451 tacctc 22187446  T

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Target: scaffold0011 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 185 - 237
Target Start/End: Original strand, 187980 - 188032
Alignment:
Q  185 tttccgagcatagctaaattgaaagcagacaagtctttaaaacccattcctcc 237  Q
    ||||| |||||||||||||| |||||||| ||||||||||||||||| |||||    
T  187980 tttcctagcatagctaaattaaaagcagataagtctttaaaacccatacctcc 188032  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 129 - 237
Target Start/End: Complemental strand, 49641301 - 49641193
Alignment:
Q  129 ctttaaaaatgcgagaaaccaaagagtttggttcagacatgaatttacacccttgctttccgagcatagctaaattgaaagcagacaagtctttaaaacc 228  Q
    |||| ||||| |||||||||||||| | |||||| |  || || || || || || ||||| |||||||||||||| |||||||| |||||||| |||||    
T  49641301 ctttgaaaatccgagaaaccaaagaatctggttctgtgataaacttccaaccctgttttcctagcatagctaaattaaaagcagataagtctttgaaacc 49641202  T
Q  229 cattcctcc 237  Q
    ||| |||||    
T  49641201 catacctcc 49641193  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 231
Target Start/End: Original strand, 19822407 - 19822507
Alignment:
Q  131 ttaaaaatgcgagaaaccaaagagtttggttcagacatgaatttacacccttgctttccgagcatagctaaattgaaagcagacaagtctttaaaaccca 230  Q
    ||||| || |||||||||| ||||||||| || | ||  || || || || ||||| || | |||||||||||||||||| || ||||||||||| ||||    
T  19822407 ttaaagatacgagaaaccagagagtttggctctgtcaaaaacttccatccctgcttgcccaacatagctaaattgaaagccgataagtctttaaagccca 19822506  T
Q  231 t 231  Q
    |    
T  19822507 t 19822507  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 237
Target Start/End: Original strand, 17243983 - 17244035
Alignment:
Q  185 tttccgagcatagctaaattgaaagcagacaagtctttaaaacccattcctcc 237  Q
    ||||| |||||||||||||| |||||||| || |||||||||||||| |||||    
T  17243983 tttcctagcatagctaaattaaaagcagataaatctttaaaacccatacctcc 17244035  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 240
Target Start/End: Original strand, 40064637 - 40064704
Alignment:
Q  173 ttacacccttgctttccgagcatagctaaattgaaagcagacaagtctttaaaacccattcctccgtg 240  Q
    ||||| |||||||| ||||||||||| |||||||||||||  |  ||||| |||||||| ||||||||    
T  40064637 ttacagccttgcttgccgagcatagccaaattgaaagcagtgagatctttgaaacccatacctccgtg 40064704  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 17753750 - 17753802
Alignment:
Q  130 tttaaaaatgcgagaaaccaaagagtttggttcagacatgaatttacaccctt 182  Q
    ||||||||||||||| || | |||||| ||||| ||||||||||| |||||||    
T  17753750 tttaaaaatgcgagacacaagagagttgggttctgacatgaatttccaccctt 17753802  T

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