View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2984_low_35 (Length: 242)
Name: NF2984_low_35
Description: NF2984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2984_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 232
Target Start/End: Original strand, 988967 - 989182
Alignment:
| Q |
17 |
aaagataaggaattgccccctcttcaagagccgaaaaaacaaaggcaagttatgaggatgtatggcttcggatatgatcctgttggtgataattacaagg |
116 |
Q |
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| T |
988967 |
aaagataaggaattgccccttcttcaagagccaaaaaaacaaaagcacgttatgaggatgtatggcttcggatatgatcctgttggtgataattacaagg |
989066 |
T |
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| Q |
117 |
ttgtagtctttttacgtttaattgattctaatattagtaattttgttgacaaatataaagtgaaggttcatactttgggtactagttcttgggaaaacat |
216 |
Q |
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| T |
989067 |
ttgtagtctttttacgtttaattgattctaatattagtaattttgttgacaaatataaagtgaaggttcatactttgggtactagttcttgggaaaacat |
989166 |
T |
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| Q |
217 |
ttcgaatttccctttg |
232 |
Q |
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|||||||||||||||| |
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| T |
989167 |
ttcgaatttccctttg |
989182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 73 - 120
Target Start/End: Original strand, 997197 - 997244
Alignment:
| Q |
73 |
gatgtatggcttcggatatgatcctgttggtgataattacaaggttgt |
120 |
Q |
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| T |
997197 |
gatgtatggcttcggatatgaccctgttagtgataattacaaggttgt |
997244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 73 - 120
Target Start/End: Original strand, 1013587 - 1013634
Alignment:
| Q |
73 |
gatgtatggcttcggatatgatcctgttggtgataattacaaggttgt |
120 |
Q |
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| T |
1013587 |
gatgtatggcttcggatatgaccctgttagtgataattacaaggttgt |
1013634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 231
Target Start/End: Original strand, 968387 - 968465
Alignment:
| Q |
153 |
gtaattttgttgacaaatataaagtgaaggttcatactttgggtactagttcttgggaaaacatttcgaatttcccttt |
231 |
Q |
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| T |
968387 |
gtaattttgttgaaaaagacaaagtgatggttcatactttgggcaccaatgcttgggaaagcattcagaagttcccttt |
968465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 195
Target Start/End: Complemental strand, 1937336 - 1937294
Alignment:
| Q |
153 |
gtaattttgttgacaaatataaagtgaaggttcatactttggg |
195 |
Q |
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| T |
1937336 |
gtaattttgttgacaaccatgaagtgaaggttcatactttggg |
1937294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 194
Target Start/End: Complemental strand, 1931510 - 1931469
Alignment:
| Q |
153 |
gtaattttgttgacaaatataaagtgaaggttcatactttgg |
194 |
Q |
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| T |
1931510 |
gtaattttgttgacaaccatgaagtgaaggttcatactttgg |
1931469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 120
Target Start/End: Complemental strand, 22672566 - 22672519
Alignment:
| Q |
73 |
gatgtatggcttcggatatgatcctgttggtgataattacaaggttgt |
120 |
Q |
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||||||| ||||||||||||| |||||| ||||||||||||||||||| |
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| T |
22672566 |
gatgtattgcttcggatatgaccctgttagtgataattacaaggttgt |
22672519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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