View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2984_low_36 (Length: 238)
Name: NF2984_low_36
Description: NF2984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2984_low_36 |
 | |
|
| [»] chr6 (4 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 134 - 238
Target Start/End: Original strand, 31042595 - 31042700
Alignment:
| Q |
134 |
tttactcta-tggtgctgactacttgtagttctcgattatcttatttattctattcaactatatgagtggtgatagtttcactatttctgctaggtcttt |
232 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31042595 |
tttactctaatggtgctgactacttgtagttctcaattgtcttatttattctattcaactatatgagtggtgatagtttcactatttctgctaggtcttt |
31042694 |
T |
|
| Q |
233 |
gatatt |
238 |
Q |
| |
|
|||||| |
|
|
| T |
31042695 |
gatatt |
31042700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 104 - 237
Target Start/End: Original strand, 31106207 - 31106345
Alignment:
| Q |
104 |
ataatgttgatattgaatggttcaaaataatttactcta-tggtgctgactact----tgtagttctcgattatcttatttattctattcaactatatga |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||| || || |||||||||| ||| ||||||||||||| |
|
|
| T |
31106207 |
ataatgttgatattgaatggttcaaaataatttactctaatggtgctgacaactagcttgtagttttccatcatcttatttagtctcttcaactatatga |
31106306 |
T |
|
| Q |
199 |
gtggtgatagtttcactatttctgctaggtctttgatat |
237 |
Q |
| |
|
||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
31106307 |
gtgctgatagtttcagtatttctgctaggtctttgatat |
31106345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 31107925 - 31107988
Alignment:
| Q |
172 |
tcttatttattctattcaactatatgagtggtgatagtttcactatttctgctaggtctttgat |
235 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
31107925 |
tcttatttattctcttcaactatatgagtggtgatagtttcatgatttctgctaggtctttgat |
31107988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 235
Target Start/End: Complemental strand, 31095134 - 31095086
Alignment:
| Q |
187 |
tcaactatatgagtggtgatagtttcactatttctgctaggtctttgat |
235 |
Q |
| |
|
|||||||||| |||||||| |||| | ||||| |||||||||||||||| |
|
|
| T |
31095134 |
tcaactatatcagtggtgacagttcctctattcctgctaggtctttgat |
31095086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University