View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2984_low_40 (Length: 235)
Name: NF2984_low_40
Description: NF2984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2984_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 141 - 219
Target Start/End: Complemental strand, 29297736 - 29297658
Alignment:
| Q |
141 |
aaaaataaactaatgatcataacacaaacctcaactgaagaataattcacggcaagggaaaaattgactatatgataaa |
219 |
Q |
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| T |
29297736 |
aaaattaaactaatgagcataacacaaaccttaactgaagaataattcatggcaagggaaaaattgactatataataaa |
29297658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 136 - 219
Target Start/End: Complemental strand, 29306501 - 29306416
Alignment:
| Q |
136 |
tttttaaaaataaactaatgatcataacacaaacctcaactgaagaataattcacgg--caagggaaaaattgactatatgataaa |
219 |
Q |
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| T |
29306501 |
tttttaaaaataaactaatgatcataacacaaacctcaactgaagaataattcatggtataagggaaaaatttactatataataaa |
29306416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 117
Target Start/End: Complemental strand, 29298007 - 29297939
Alignment:
| Q |
50 |
ttgaaagtccattcttattatttactttttct-ggataatttgaaaattctgcatgaagcatgctttgt |
117 |
Q |
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||||||||||||| | ||||||| ||||| | |||||| ||||||| ||||||||||||||||||||| |
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| T |
29298007 |
ttgaaagtccattatgattatttgtttttttttggataagttgaaaactctgcatgaagcatgctttgt |
29297939 |
T |
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