View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2984_low_41 (Length: 232)
Name: NF2984_low_41
Description: NF2984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2984_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 104; Significance: 5e-52; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 2 - 157
Target Start/End: Original strand, 41785123 - 41785277
Alignment:
| Q |
2 |
taagttaagtgaaaattcatctaaatatgtcatgtgatcgattaagttgtcacataaacatttcaattgttatattatcaaaaatatagcctcaaaatat |
101 |
Q |
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| T |
41785123 |
taagttaagtaaaaattcatctaaatatgtcatgtgatcgactaagttgtcacataaacatctcaattgttatattatc-aaaatataacctcaaaatac |
41785221 |
T |
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| Q |
102 |
acaagaataaaataaacatttaaattggaggatcgatatattgaatttagaaatat |
157 |
Q |
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| T |
41785222 |
acaagagtaaaataaacattcaaattggaggaccaatatattaaatttagagatat |
41785277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 147 - 232
Target Start/End: Original strand, 41785339 - 41785424
Alignment:
| Q |
147 |
tttagaaatattcttaatagtattatgcttcattaaggttcactaatcaatcatccacgtttaacctatctagctagcttcttcct |
232 |
Q |
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| T |
41785339 |
tttagaaatattcttaatagtattatgcttcattaaggttcactaatcaatcatccacatttaacctatctagctagcttcttcct |
41785424 |
T |
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