View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2984_low_42 (Length: 221)

Name: NF2984_low_42
Description: NF2984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2984_low_42
NF2984_low_42
[»] chr6 (3 HSPs)
chr6 (9-196)||(19349420-19349599)
chr6 (9-196)||(29977501-29977680)
chr6 (9-196)||(7014524-7014704)
[»] chr3 (2 HSPs)
chr3 (9-196)||(19874727-19874906)
chr3 (9-196)||(15275364-15275545)
[»] chr7 (1 HSPs)
chr7 (9-196)||(27219606-27219783)
[»] chr8 (2 HSPs)
chr8 (9-196)||(35183235-35183415)
chr8 (9-196)||(36698911-36699090)
[»] scaffold0027 (1 HSPs)
scaffold0027 (9-196)||(139420-139600)
[»] chr1 (1 HSPs)
chr1 (21-83)||(28357471-28357533)
[»] chr5 (2 HSPs)
chr5 (9-82)||(26904605-26904678)
chr5 (124-196)||(8379693-8379764)


Alignment Details
Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 9 - 196
Target Start/End: Complemental strand, 19349599 - 19349420
Alignment:
Q  9 cataatactatgtttgtgtatggttctcataattggtggtcagaccctctacaatgtttgggaatcgactgatttttggtatttttgtatgactggatga 108  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||| |||| ||||| |||||||||||||||||||||||||||||||||||         
T  19349599 cataatactacgtttgtgtatggttctcataattggtggtcggaccctttacagtgtttaggaatcgactgatttttggtatttttgtatgactg----- 19349505  T
Q  109 ttgtttcttatcagagtggcttctttggtacaccttgtacctaggagtgttacacgaccgaagttattatatttcattttgatttctt 196  Q
       ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  19349504 ---tttcttatcggagtggcttctttggtacaccttgtacctaggagtgttacacggccgaagttaatatatttcattttgatttctt 19349420  T

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Target: chr6; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 9 - 196
Target Start/End: Original strand, 29977501 - 29977680
Alignment:
Q  9 cataatactatgtttgtgtatggttctcataattggtggtcagaccctctacaatgtttgggaatcgactgatttttggtatttttgtatgactggatga 108  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||| || || | |||||||||||||||||||||||||||||||||||||||||         
T  29977501 cataatactatgtttgtgtatggttctcacaattggtggtcggactctttatagtgtttgggaatcgactgatttttggtatttttgtatgactg----- 29977595  T
Q  109 ttgtttcttatcagagtggcttctttggtacaccttgtacctaggagtgttacacgaccgaagttattatatttcattttgatttctt 196  Q
       ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  29977596 ---tttcttatcggagtggcttctttggtacaccttgtacctaggagtgttacacggccgaagttaatatatttcattttgatttctt 29977680  T

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Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 196
Target Start/End: Complemental strand, 7014704 - 7014524
Alignment:
Q  9 cataatactatgtttgtgtatggttctcataattggtggtcagaccctctacaatgtttgggaatcgactgatttttggta-tttttgtatgactggatg 107  Q
    ||||||| ||||||||||||||| |||||||||||||||||||| | | || |||||||||| ||||||||| | ||| || ||||||||||||||  ||    
T  7014704 cataatattatgtttgtgtatggctctcataattggtggtcagatcttttataatgtttgggtatcgactgactattgataatttttgtatgactgtttg 7014605  T
Q  108 attgtttcttatcagagtggcttctttggtacaccttgtacctaggagtgttacacgaccgaagttattatatttcattttgatttctt 196  Q
    ||         || | ||||||||||||||||| ||||||||||||||||||||||| ||   |||| |||||||||||||||||||||    
T  7014604 atc--------tcggggtggcttctttggtacatcttgtacctaggagtgttacacggccattgttaatatatttcattttgatttctt 7014524  T

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Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 9 - 196
Target Start/End: Complemental strand, 19874906 - 19874727
Alignment:
Q  9 cataatactatgtttgtgtatggttctcataattggtggtcagaccctctacaatgtttgggaatcgactgatttttggtatttttgtatgactggatga 108  Q
    |||||||||||||||||||||||||||||||||||||| || |||||| |||| |||||||||||||||||||||||||||||||||||||||           
T  19874906 cataatactatgtttgtgtatggttctcataattggtgttcggaccctttacagtgtttgggaatcgactgatttttggtatttttgtatgac------- 19874814  T
Q  109 ttgtttcttatcagagtggcttctttggtacaccttgtacctaggagtgttacacgaccgaagttattatatttcattttgatttctt 196  Q
     ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  19874813 -tgtttcttatcggagtggcttctttagtacaccttgtacctaggagtgttacacggccgaagttattctatttcattttgatttctt 19874727  T

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Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 196
Target Start/End: Complemental strand, 15275545 - 15275364
Alignment:
Q  9 cataatactatgtttgtgtatggttctcataattggtggtcagaccctctacaatgtttgggaatcgactgatttttggta--tttttgtatgactggat 106  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||| || | |||||||| ||||||||| | ||||||  ||||||||||||         
T  15275545 cataatactatgtttgtgtatggttctcataattggtagtcggaccctttatagtgtttgggtatcgactgactattggtaattttttgtatgac----- 15275451  T
Q  107 gattgtttcttatcagagtggcttctttggtacaccttgtacctaggagtgttacacgaccgaagttattatatttcattttgatttctt 196  Q
       |||||  |||| | ||||||  |||||||||||||||||||||||||||||||||||||   ||| |||||||||||||||||||||    
T  15275450 ---tgtttgctatcggggtggctcttttggtacaccttgtacctaggagtgttacacgaccgttcttaatatatttcattttgatttctt 15275364  T

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Target: chr7 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 9 - 196
Target Start/End: Original strand, 27219606 - 27219783
Alignment:
Q  9 cataatactatgtttgtgtatggttctcataattggtggtcagaccctctacaatgtttgggaatcgactgatttttggtatttttgtatgactggatga 108  Q
    ||||||||||||||||||||||||||||||| ||||||||| || ||| |||| ||||||||| |||||||||||| ||||||||||||||||||         
T  27219606 cataatactatgtttgtgtatggttctcatatttggtggtcggatcctatacagtgtttgggactcgactgattttaggtatttttgtatgactg----- 27219700  T
Q  109 ttgtttcttatcagagtggcttctttggtacaccttgtacctaggagtgttacacgaccgaagttattatatttcattttgatttctt 196  Q
        |||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||| |||||||||||||||    
T  27219701 ----ttcttatcggagtggcttctttggtacaccttatacctaggagtgttacacggccgaagttatt-tatctcattttgatttctt 27219783  T

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Target: chr8 (Bit Score: 102; Significance: 8e-51; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 9 - 196
Target Start/End: Original strand, 35183235 - 35183415
Alignment:
Q  9 cataatactatgtttgtgtatggttctcataattggtggtcagaccctctacaatgtttgggaatcgactgatttttggtatttttgtatgactggatga 108  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||| |||| |||||||| ||||||||| || ||||||||||       || ||||    
T  35183235 cataatactatgtttgtgtatgattctcataattggtggtcggaccctttacagtgtttgggtatcgactgacttctggtattttt-------tgtatga 35183327  T
Q  109 ttgtttcttatcagagtggcttctttggtacaccttgtacctaggagtgttacacgaccgaagttattatatttcattttgatttctt 196  Q
     ||||| ||||| |||||||||||||||||||||||||| |||||||||||||||| |||| |||| |||||||||||||||||||||    
T  35183328 ctgtttattatcggagtggcttctttggtacaccttgtatctaggagtgttacacggccgacgttaatatatttcattttgatttctt 35183415  T

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Target: chr8; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 9 - 196
Target Start/End: Original strand, 36698911 - 36699090
Alignment:
Q  9 cataatactatgtttgtgtatggttctcataattggtggtcagaccctctacaatgtttgggaatcgactgatttttggtatttttgtatgactggatga 108  Q
    ||||||||||||||||||||||  ||||||||||||| ||| |||||| |||| |||||||| ||||||||| | |||||| ||||       || ||||    
T  36698911 cataatactatgtttgtgtatgactctcataattggtagtcggaccctttacagtgtttgggtatcgactgactattggtaatttt-------tgtatga 36699003  T
Q  109 ttgtttcttatcagagtggcttctttggtacaccttgtacctaggagtgttacacgaccgaagttattatatttcattttgatttctt 196  Q
    ||||||  |||| | |||||||||||| ||||||||||||||| |||||||||||| |||  |||| |||||||||||||||||||||    
T  36699004 ttgttt-atatcggggtggcttctttgatacaccttgtacctaagagtgttacacggccgttgttaatatatttcattttgatttctt 36699090  T

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Target: scaffold0027 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 9 - 196
Target Start/End: Original strand, 139420 - 139600
Alignment:
Q  9 cataatactatgtttgtgtatggttctcataattggtggtcagaccctctacaatgtttgggaatcgactgatttttggta-tttttgtatgactggatg 107  Q
    ||||||||||||||||| ||||| ||||||||||||||||| || ||| |||| |||||||| ||||||||| | |||||| ||||||||||||||  ||    
T  139420 cataatactatgtttgtatatggctctcataattggtggtcggatcctttacagtgtttgggtatcgactgactattggtaatttttgtatgactgtttg 139519  T
Q  108 attgtttcttatcagagtggcttctttggtacaccttgtacctaggagtgttacacgaccgaagttattatatttcattttgatttctt 196  Q
    ||         || | ||||||||||||||||||||||||||||||||||||||||| |||  |||| |||||||||||||||||||||    
T  139520 atc--------tcggggtggcttctttggtacaccttgtacctaggagtgttacacggccgttgttaatatatttcattttgatttctt 139600  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 28357533 - 28357471
Alignment:
Q  21 tttgtgtatggttctcataattggtggtcagaccctctacaatgtttgggaatcgactgattt 83  Q
    ||||||||  |||||||||||||||||||||||||  |||| |||||||| ||||||||||||    
T  28357533 tttgtgtacagttctcataattggtggtcagaccccttacattgtttgggtatcgactgattt 28357471  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 26904605 - 26904678
Alignment:
Q  9 cataatactatgtttgtgtatggttctcataattggtggtcagaccctctacaatgtttgggaatcgactgatt 82  Q
    ||||| || |||||||||||||||||||| | ||||||||| |||| | |||| |||||||| |||||||||||    
T  26904605 cataacaccatgtttgtgtatggttctcagagttggtggtcggaccatttacattgtttgggtatcgactgatt 26904678  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 196
Target Start/End: Complemental strand, 8379764 - 8379693
Alignment:
Q  124 gtggcttctttggtacaccttgtacctaggagtgttacacgaccgaagttattatatttcattttgatttctt 196  Q
    |||||| |||||||||||||||||| || ||||||||||| |||   |||| |||||  ||||||||||||||    
T  8379764 gtggctcctttggtacaccttgtacttacgagtgttacactacc-ttgttaatatatcccattttgatttctt 8379693  T

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