View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2984_low_5 (Length: 460)
Name: NF2984_low_5
Description: NF2984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2984_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 210 - 447
Target Start/End: Original strand, 39679448 - 39679685
Alignment:
| Q |
210 |
tctccatggccatcgaaacagaaacccaaacccaaacccaaaccgggttcaaattagttggcttcaagaacttcgttcgagccaacccaaaatcagaccg |
309 |
Q |
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| T |
39679448 |
tctccatggccatcgaaacagaaacccaaacccaaacccaaaccgggttcaaattagttggcttcaagaacttcgtcagagccaacccaaaatcagaccg |
39679547 |
T |
|
| Q |
310 |
gttcaatgtaaaacgcttccaccacgtcgagttctggtgcaccgacgcaacaaacaccgcacgccgcttctctcacggactcggaatgccgattgtcgct |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39679548 |
gttcaatgtaaaacgcttccaccacgtcgagttctggtgcaccgacgcaacaaacaccgcacgccgcttctctcacggactcggaatgccgattgtcgct |
39679647 |
T |
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| Q |
410 |
aaatccgacctctccaccggaaacctaactcacgcttc |
447 |
Q |
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| T |
39679648 |
aaatccgacctctccaccggaaacctaactcacgcttc |
39679685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 237 - 447
Target Start/End: Complemental strand, 39638067 - 39637857
Alignment:
| Q |
237 |
aaacccaaacccaaaccgggttcaaattagttggcttcaagaacttcgttcgagccaacccaaaatcagaccggttcaatgtaaaacgcttccaccacgt |
336 |
Q |
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|||||| |||||||||||||||||| |||||||| || || |||||||| |||||||||||||||||||| ||||| | |||||||| |||||||| |
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| T |
39638067 |
aaacccgaacccaaaccgggttcaagttagttggatttaaaaacttcgtctgagccaacccaaaatcagacttattcaaattcaaacgctttcaccacgt |
39637968 |
T |
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| Q |
337 |
cgagttctggtgcaccgacgcaacaaacaccgcacgccgcttctctcacggactcggaatgccgattgtcgctaaatccgacctctccaccggaaaccta |
436 |
Q |
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| T |
39637967 |
cgagttctggtgcactgacgcaacaaacaccgcacgccgattctctcacggactcggaatgccaatcgttgctaaatccgacctctccactggaatccta |
39637868 |
T |
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| Q |
437 |
actcacgcttc |
447 |
Q |
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||||| ||||| |
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| T |
39637867 |
actcatgcttc |
39637857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 247 - 447
Target Start/End: Complemental strand, 39642749 - 39642549
Alignment:
| Q |
247 |
ccaaaccgggttcaaattagttggcttcaagaacttcgttcgagccaacccaaaatcagaccggttcaatgtaaaacgcttccaccacgtcgagttctgg |
346 |
Q |
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||||||||||||||| |||||||| | ||| || ||| | ||| ||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
39642749 |
ccaaaccgggttcaagttagttgggtgcaaaaatttcatccgaaccaacccaaaaacagaccggttcaaagtaaaacacttccaccacgtcgagttctgg |
39642650 |
T |
|
| Q |
347 |
tgcaccgacgcaacaaacaccgcacgccgcttctctcacggactcggaatgccgattgtcgctaaatccgacctctccaccggaaacctaactcacgctt |
446 |
Q |
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| T |
39642649 |
tgcaccgacgcaacaaacactgcacaccgtttctctcatggactcggcatgccaatcgtcgccaaatccgacctctccaccggaaaccttactcacgctt |
39642550 |
T |
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| Q |
447 |
c |
447 |
Q |
| |
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| |
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| T |
39642549 |
c |
39642549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 39679274 - 39679380
Alignment:
| Q |
18 |
ccatccaccctcacacaccatttctcccacgcaacacacaaaactccaaccacgccgccactccattactctcatccaatcacattcctccacgtttcac |
117 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39679274 |
ccatccactctcacacaccatttctcccacgcaacacacaaaactccaaccacgccgccactccattactctcatccaatcacattcctccacgtttcac |
39679373 |
T |
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| Q |
118 |
atcccct |
124 |
Q |
| |
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||||||| |
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| T |
39679374 |
atcccct |
39679380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 111; Significance: 7e-56; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 237 - 447
Target Start/End: Complemental strand, 7056621 - 7056411
Alignment:
| Q |
237 |
aaacccaaacccaaaccgggttcaaattagttggcttcaagaacttcgttcgagccaacccaaaatcagaccggttcaatgtaaaacgcttccaccacgt |
336 |
Q |
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|||| |||||| ||||||||||||| |||||||| ||||| || ||| | ||| ||||||||||| ||||||| ||||| |||||||||||||||||||| |
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| T |
7056621 |
aaacacaaaccaaaaccgggttcaagttagttgggttcaaaaaattcatccgaaccaacccaaaaacagaccgtttcaaagtaaaacgcttccaccacgt |
7056522 |
T |
|
| Q |
337 |
cgagttctggtgcaccgacgcaacaaacaccgcacgccgcttctctcacggactcggaatgccgattgtcgctaaatccgacctctccaccggaaaccta |
436 |
Q |
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| T |
7056521 |
ggaattctggtgcaccgacgcaaccaacaccgcacttcgtttctctcaaggacttggtatgccaatcgtcgctaaatccgacctgtccaccggaaaccta |
7056422 |
T |
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| Q |
437 |
actcacgcttc |
447 |
Q |
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| ||||||||| |
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| T |
7056421 |
attcacgcttc |
7056411 |
T |
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